Module 6: Unit 2-3 Flashcards
With the lock and key analogy what is the key and what lock.
Enzymes have an active site that is complementary tot he substrate
Substrate - key
Active site - lock
How do enzymes function?
Enzymes = biocatalysts
- increase reaction rate (V0) by lowering the activation energy of a chemical reaction
What is the activation energy?
Is the energy that has to be overcome for a substrate to be converted to a product.
EX: breaking apart of surprise into fructose and glucose requires a huge amount of energy. Enzymes have the ability of lowering that activation energy and, thus INCREASE the probability of that action to occur
What happens when there is more enzyme present?
The faster the reaction occurs or the faster product is formed.
What factors impact enzyme velocity?
What is the driving factor for enzymes?
What is the common thread in changing reaction rates?
- pH
- Temperature
Driving factor is to get the body back to homeostasis
—> Common thread is conformation change
The relationship between substrate concentration and reaction rate is ________
Hyperbolic,
A hyperbolic equation is used to analyze enzyme kinetics, acid-base behavior, and absorption processes
Describe a hyperbola graph
Starts steep and plantos with higher concentrations
Name the four different types of schematic depiction of inhibitor action. *Picture on slide 16 from Module 6 unit 2-3
- Normal binding
- Competitive inhibition
- Noncompetitive inhibition (mixed)
- Uncompetitive inhibition
Name the inhibitor that binds at the active site instead of substrate, has unchanged Vmax, and Increased Km.
Competitive inhibitor
Name the inhibitor that bonds at a site other than the binding site, affects the conformation of the enzyme, including the shape of the active site; decreased Vmax, same Km
Mixed (noncompetitive) inhibitor
Name the inhibitor that binds at a site other than the binding site, but only is substrate is bound; once the inhibitor binds the reaction does not proceed; decreased Vmax, and decreased Km
Uncompetitive inhibitor
T or F
The product of one enzyme reaction can be the substrate of one or more other enzyme reactions.
T
T or F
All enzymes are regulated
F
Only certain enzymes are regulated (commonly first step in a pathway, or enzymes at or near ‘intersections’)
Reversible enzymes are rarely regulated
T or F
Enzymes in extracellular spaces are commonly catalyzed reactions independently of other enzymes.
T
T or F
Some enzymes are present in inactive form to be quickly activated when their activity is required
T
EX: enzymes in the digestive tract (break down nutrients to building blocks which then can be absorbed)
Explain the enzyme regulation overview of covalent reactions.
Reversible and nonreversible!!
Reversible - phosphorylation/dephophorylation… methylation/demethylation
Nonreversible - Removal of C-/N- terminal amino acids
Explain the enzyme regulation of non-covalent reactions.
Allosteric
- uncompetitive
- mixed
Competitive
- always reversible (equilibrium)
FITB
____-_______ and ________ are found in the intracellular realm
non-covalent, and reversible
T or F
The non-reversible modification is only found in the extrecellular realm.
T
T or F
Non-covalent is always reversible because it’s based on equilibrium situations, ligand binding interactions between the regulatory compound and the protein.
T
What is allosteric?
Inhibitor binds in ligand-binding fashion at a specific site that is not the active site
During Intracellular exhume regulation (non-covalent)
FITB
A positive modulator is _____________ (negative modulator is inhibiting)
Activating
The binding of the modulator affects the conformation (shape of both subunits and changes the affinity of the active site for S)
When a proteins conformation changes so does its _____ ______ ______
Change in function
What is an example of covalent, reversible regulation?
Phosphorylase phosphorylation/dephosphorylation
Give an example of intracellular enzyme regulation in a physiological situation.
Glycogen is broken down when the blood glucose levels drops due to use of glucose for energy production (NS, skeletal and heart muscle)
- dropping blood glucose levels —> hormone glucagon activated
- exercise —> hormone epinephrine released
What is the function of kinases?
Transfer phosphate from one molecule to another
What is the function of phosphatases?
Remove phosphate from molecules (releasing inorganic phosphate)
Explain Proteolytic Cleavage.
Involves enzymes that break peptide bonds. Hydrolysis of specific peptide bonds
Inactive precursors of enzymes normally have the prefix _______ and suffix _____
Prefix ‘pro’
Suffix ‘gen’
What do C- and/or N- terminal sequences of amino acids do?
Keep enzyme/protien inactive until they are removed by proteolytic cleavage (hydrolysis of specific peptide bonds); enzymes are proteases or peptidases
What are two examples within the Non-Reversible Enzyme Regulation (Proteolytic Cleavage) that we will be using in this unit?
- proteases in the digestive tract: ex; trypsin (enzyme), chymotrypsin (enzyme) (the trigger is the arrival of food)
- Blood clotting cascade (the natural tigger is injury in the BV; there are pathological triggers, ex; plaques in BV
In the example on slide 32 of proteases of the digestive tract chymotrypsinogen and trypsinogen are?
A. Active precursors
B. Median precursors
C. Regulatory precursors
D. Inactive precursors
D,
Because they end in the suffix ‘-gen’
Look at and explain the diagram on slide 32: proteases of the digestive tract. Understand the situation!!!!
We need a fast activation of an extracellular enzyme in the case of digestive proteases, which, it they were active all the time would actually target our own proteins in cell membranes and would start digesting our intensively tract. THATS WHY we can only have them active in the case of the presence of food.
*digestive proteases are inactive, when there is no food to digest (they would start breaking down our own proteins) —-> the arrival of food in the digestive tract triggers this series of events leading to the activation of digestive proteases.
What are digestive proteases?
Enzymes that break down proteins into smaller peptides and amino acids, facilitating digestion. Essential for various bodily functions, such as building and repairing tissues, producing enzymes and hormones, and supporting immune function.
Examples: pepsin, trypsin, chymotrypsin, carboxypeptidase, aminopeptidase
What is proteases?
Also known as proteinases or peptidases, are enzymes that catalyze the breakdown of proteins into smaller peptides or individual amino acids by cleaving the peptide bonds between the amino acids.
Trypsin and chymotrypsin are digestive proteases and are examples of ____-________ _________ ________ ________ through the removal of C an N-terminal sequences
Non-reversible covalent enzyme regulation
Blood clotting is an example of what enzyme regulation?
And is it intracellular or extracellular?
Non-reversible enzyme regulation
Extracellular
The blood clotting cascade is an example of what?
Non-reversible covalent enzyme regulation through the removal of C- and N- terminal sequences
In the Proteolytic cleavage in the blood clotting process, carboxylase is dependent on what?
Vitamin K-dependent
T or F
The gut microbiome is a major source of vitamin k
T
People who are on blood thinners have to be careful of what?
Not consuming to many green leafy vegetables, because it might mess with the concentration of their blood thinners,
Some blood thinners are vitamin K
A. Agonistic
B. Antagonists
C. Agonists
D. Precursors
B
They competitively bind to the vitamin K binding site on the glutamate carboxylase. Leads to inhibition —> less carboxylation —> less protease activity —> less fibrin formation —> less blood clotting
*antidote for this is more Vitamin K
Most enzymes are _____
Proteins
Tempurture, pH, certain ions, and regulatory measures affect the function of enzymes by
A. Blocking their active site
B. Altering the structure of the substrate
C. Affecting their conformation
D. Increasing or lowering the activation energy
C
*LOOK AT #3 on quiz 2 regarding Mechaelis-Menten kinetics equation and the parts of it
Which of the following types of regulations is non-reversible?
A. Feedback inhibition
B. Competitive inhibition
C.Phosphorylation.dephosphorylation
D. Proteolytic cleavage
D
In _________ inhibition, the structure of the inhibitor resembles the structure of the substrate of the affected enzyme
Competitive
Which of the following types of regulations is typical for extracellular space?
A. Phosphorylation
B. Competitive inhibition
C. Proteolytic cleavage
D. Feedback inhibition
C
Activation of the digestive proteases trypsin and chymotrypsin is an example of ______ regulation
A. Noncovalent, nonreversible
B. Covalent reversible
C. Covalent, nonreversible
D. Noncovalent, reversible
C
T or F
The higher the pH, the higher the enzyme catalyzed reaction rate
F
Warfarin, the active ingredient in the blood-thinning drug ‘coumadin’
A. Inactivates glutamate carboxylase by competitively binding instead of Vitamin K
B. Inhibits the activation of Ca2+ dependent proteases in blood-clotting cascade by chelating Ca2_ and thus making it unavailable as a cofactor
C. Inhibits fibrin molecules from cross-linking to form a blood clot
A
T or F
Enzyme activity is temperature dependent
T
Which portions of the Michaelis-Menten equation are constant?
Km and Vmax