Midterm 2 Flashcards
Who came up with the idea of biodiversity classification? What did they invent?
Carl Von Linnaeus - invented binomial nomenclature = classical taxonomy system
What did Linnaeus believe about organisms? Suggested?
Believed in immutability of species = suggested world’s biodiversity originated east Turkey where Noah’s ark landed
Why use binomial nomenclature and not common names? 5 reasons
1- consistency
2- clear communication between languages
3- some species have no common name
4- clear distinction between species and subspecies
5- evolutionary (phylogenetic) interpretation
What is taxonomy?
The science and system of classifying organism
What is taxon (or plural Taxa)?
A single level in the taxonomic classification system
What is systematics?
Science and system of organization and classifying Taxa and understanding the evolution of traits based on their phylogenetic relations
What are the 2 methods of systematics?
1- phenetic
2- phylogenetic
Explain phenetic as a method of systematics
Species are grouped according to their overall similarities
Explain phylogenetic as a method of systematics
Species are classified according to how they shared a common ancestor
Identify the 2 methods and 3 schools of systematics and which ones are linked
(Method) phenetic –> (school) numerical taxonomy
(Method) phylogenetic –>
(school) cladistics = phylogenetic systematics
(school) evolutionary taxonomy = evolutionary systematics
What does scientific nomenclature and taxonomy reflect?
Phylogenetic relationships = all members of a tax on should share a single common ancestor
How can we figure out phylogenetic relationships if we can’t go back in time?
We use evolutionary principles to compare traits among Taxa
What is phylogenetic systematics?
Philosophy and methodology for the reconstruction of ancestor - descendant relationships amongst a set of Taxa
What are the 4 basic tenets of phylogenetic systematics?
1- characters
2- history of changes
3- distribution of characters
4- monophyletic groups
What is the first basic tenets of phylogenetic systematics?
Characters used to reconstruct a phylogeny are modifications of pre-existing characters
What is the second basic tenets of phylogenetic systematics?
History of changes in characters reflect the ancetsor-descendant relationships of organisms so bearing the characters
What is the third basic tenets of phylogenetic systematics?
Distribution of characters among a set of Taxa is used to identify monophyletic groups
What is the fourth basic tenets of phylogenetic systematics?
Monophyletic groups are identified by shared derived traits. All other Taxa outside the monophyletic group possess the ancestral trait
What is cladistics?
Relationships are determined by the presence of synapomorphies = shared/derived characters
What are the 2 ways characters can occur?
1- plesiomorphic = primitive or original state
2- apomorphic = derived state
What is the monophyletic group?
Defined by synapomorphies (contains hypothetical common ancestor and all of its descendants)
What is paraphyletic group?
Group containing a hypothetical common ancestor and some (but not all) of its descendants
What is the polyphyletic group?
Taxa not including their hypothetical common ancestor
How does phylogenetic classification relate to cladistics?
It groups species based on their most recent common ancestor
How does phylogenetic classification relate to cladistics work? And what is it called?
species split during evolution = forms 2 descendant species = cladistic classification groups them together
Called sister species
Who and when came up with the idea of phylogenetic classification relating to cladistics?
Ridley in 1996
What is a phylogenetic tree a hypothesis of?
Evolutionary relationships between species
What is the problem of a phylogenetic tree as a hypothesis and why is this?
Can’t know true pattern of ancestor-descendent relationships as we can’t travel back in time = only generate most probably with data given
The characters used to reconstruct a phylogeny come from? (3)
1- fossil record
2- morphological traits of living of museum species
3- genetic sequences
What is used to distinguish monophyletic groups/traits?
Shared derived traits
What is another name for monophyletic groups?
Clades
What is homology?
Similarity in character due to a common ancestry evolving from the same ancestral state
What is the important note about homology?
Homologous characters can appear very different
What is analogy?
similarity in a character due to evolutionary convergence = not shared ancestor
What is important to note about analogy and convergence?
Evolutionary convergence that affects analogy where the convergence is phenotypic is usually the result of NS
In the example of bat wings and bird wings explain homology?
Forelimbs = homology as both are inherited from a common ancestor with forelimbs
In the example of bat wings and bird wings explain analogy?
Wings = analogy as both wings evolved from different ancestors that didn’t have wings
When is homology and analogy not easy to tell apart? And why?
When phenotype is similar
Due to shared ancestry (homo) or convergence (Ana)
What is the first solution in telling apart homology and analogy?
Use traits that are very likely to be selectively neutral = no advantage or disadvantage
What is the second solution in telling apart homology and analogy?
Use many many selectively neutral traits as unlikely all influenced by selection the same way = DNA
Who created the Caminalcules?
Joseph H. Camin
What are Caminalcules?
Imaginary animals used for exercises for the principles and problems associated with classification and cladistic relationships (sequence of character change)
What are the 4 things to describe Caminalcules?
1- “evolutionary” derived
2- a degree of “genetic” similarity
3- monophyletic group
4- no preconceptions as to taxonomic significance
How is an organism’s evolutionary history documented?
In its genome
How does molecular systematics help to document an organism’s evolutionary history through it’s genome?
Uses DNA to get relatedness
How many bases of DNA has scientists discovered and in what?
110 Billion sequences of DNA in 1000’s of species
How does 2 species help to document an organism’s evolutionary history through it’s genome? (2)
More recently branched from common ancestor the more similar the 2 species are in DNA sequences
Longer the 2 species have separated the more diverged their DNA are
What can neutral variation do?
Neutral variation among DNA sequences can be used to get a molecular clock
What do phylogenies allow us to evaluate?
Evaluate the hypothesis about the origins of biodiversity
What does eukaryote mean?
Tue nucleus
When did eukaryotes first appear?
Fossil record shows 1.5-2.1 BYA
What is a eukaryote?
Membrane bound nucleus and organelles
How did cells change from prokaryotes to eukaryotes?
Prokaryotes = simple strand of DNA inside cell Eukaryotes = mitochondria, nucleus with DNA bond inside
What was the 2 major changes needed for prokaryotes to evolve into eukaryotes?
1- internal membrane and organelles known as endomembrane system
2- multicellularity = 1st eukaryotes were unicellular and many still are
What are the 5 internal membranes and organelles in the endomembrane system as one of the major changes needed for prok->euk?
1- smooth and rough ER 2- Golgi apparatus 3- vesicles 4- nuclear envelope 5- plasma membrane = interact with endomembrane organelles
What hypothesis is connected to the internal membranes and organelles as a major change from pro->euk?
Infolding hypothesis = endomembrane system resulted from infolding and pinching off of the plasm membrane
Explain how the plasm membrane pitches off and what does it form in the infolding hypothesis
Cell membrane dips inwards
Cell membrane closes around the inwards dip
The now closed dip is pinched off to floats off into cell = called a vesicle
What hypothesis is connected to the multicellularity as a major change from pro->euk?
Colony hypothesis = suggest multicellularity began when single-called organisms started to form colonies
Explain the 5 steps as to how colony hypothesis worked
1- unicellular flagellated protist 2- multiple flagellates make aggregate 3- unspecialized flagellate cells form hollow sphere 4- specialized reproductive cells form 5- cells begin to fold in to make tissue
What are the 4 steps that determined colonial green algae range of independence?
1- single-called and independent
2- individuals in colonies break apart and live independent
3- some individuals no longer independent
4- most not independent
In the 4 steps that determined colonial green algae range of independence and are the types of algae associate with each step?
1- single-called = Chlamydomonas
2- break apart = Gonium, Pandoria, Eudorina
3- no longer = Pleodorina
4- not indep = Volvox
What can a colony provide?
Protection
What 2 organelles are thought to have different origins than those of the infolding hypothesis?
Mitochondria and chloroplast
Where is it believe that mitochondria and chloroplast evolved from? What is this hypothesis called?
Descendants of free-living prokaryotes = endosymbiotic hypothesis
How does endosymbiotic hypothesis work?
Larger cells engulf smaller cells
Smaller cells live symbiotically within larger rather than being digested
Who found evidence of the endosymbiotic hypothesis?
Dr Margulis
What are the 4 basic idea that Dr Margulis discover for the endosymbiotic hypothesis?
1- double membrane
2- morphology of chloroplast
3- morphology of mitochondria
4- dividing schedules
Explain double membrane as 1 of the 4 supports that Dr Margulis discovered about the endosymbiotic hypothesis
As the mitochondria and chloroplast were engulf by a cell they developed a double membrane
Explain morphology of chloroplast as 2 of the 4 supports that Dr Margulis discovered about the endosymbiotic hypothesis
The morphology of chloroplast is similar to Cyanobacteria
Explain morphology of mitochondria as 3 of the 4 supports that Dr Margulis discovered about the endosymbiotic hypothesis
Morphology of mitochondria is similar to aerobic bacteria (an alpha-proteobacterium)