Microbiology for Dentists Theme 2 Flashcards
What is the autochthonous microbiotia ?
microorgansims characteristically found at a particular site
What is the allochthonous microbiotia ?
microorganims transiently present at a site
they dont thrive at the site but may colonise transiently if the site becomes compromised.
Where are archaea detected at increased levels ?
periodontal disease
What are the most common type of virus found in the mouth ?
bacteriophages
What is the most common viral pathogen in the mouth ?
HSV-1
Which viruses are asymptomatic in the mouth so care is needed for cross infection ?
hepatitis B and HIV
What is the most common fungus in the mouth ?
candida
What are the most abundant bacteria in the mouth ?
oral streptococci
What are the characteristics of oral streptococci ?
gram positive
alpha haemolytic
Which diseases are bacteria responsible for ?
caries
periodontitis
abcesses
What happens with oral streptococci and kiss plates ?
oral streptococci are alpha haemolytic - brownish colour change
What is alpha haemolysis ?
produces hydrogen peroxide which bleaches haemoglobin - Fe changes transition states from Fe3+ to Fe2+
How many species of bacteria naturally colonise the mouth ?
700 species- 13 phyla
How many of the species in the mouth can be cultured ?
50%
How long does it take to form mature dental plaque ?
1-4 minutes
Where do bacteria live in the mouth ?
tongue
cheek
palate
teeth
What are the lips, cheeks and palate like as a microbial habitat ?
have epithelial cells that are shed continually which get rid of bacteria
What is the tongue like as a microbial habitat ?
highly papillated which creates an anaeorbic environment
tongue is reservoir for obligate anaerobes
What are the teeth like as a microbial habitat ?
no shedding as no epithelial cell
prone to colonisation by bacteria
What is the enamel pellicle ?
a protein film between enamel and bacteria that supports and inhibits bacterial adhesion. Prevents enamel dissolution
Why do we culture microflora ?
understand physiology and biochemistry
link organism to disease
identify pathogenesis mechanisms
test antibiotics
How can it be hard to culture certain microflora ?
some bacteria are dormant - not easily reactivated
some species are fastidious
What are the culture independent methods of microbial analysis ?
PCR
Hybridisation
NGS- Metagenomics/targeted
What are holobionts ?
we are superorganisms of our on cells and microbiotia - act as one biological unit
Which streptococci are enriched in dental plaque compared to soft tissues ?
gordonii and sanguinis
Is saliva sterile ?
it is only sterile when secreted but accumulates with bacterial cells
Are there more bacteria attached to epithelial cells than there are free in saliva ?
more attached to epithelial cells
How are bacteria removed from oral surfaces ?
sloughing epithelial cell
mechanical debridement
active release
What is the problem with sampling saliva to look at the oral microbiome ?
there are different amounts of bacteria in the plaque compared to the soft tissue
What is the core microbiome ?
13 phyla present in almost everyone
What is the peripheral microbiome ?
species present in some and not others
Why do some microbiomes form clusters in different individuals ?
differences in the metabolome
this could be correlated with disease susceptibility
What does the acquired enamel pellicle do ?
it protects enamel
protects against the dissolution of enamel by keeping calcium and phosphate together
How does saliva help control plaque accumulation ?
aggregating bacteria which are then swallowed
having antimicrobial effects
Which salivary proteins bind to bacteria ?
MG2
Gp340
PRPs
Statherin
What are the roles of the salivary proteins ?
agglutinate
aggregate
inhibit
promote/inhibit microbial colonisation
What is aggregation/agglutination ?
occurs in the fluid phase
results in large clumps
large clumps removed in swallowing
What is adhesion ?
proteins in the saliva pellicle interact with bacteria resulting in the adhesion of bacteria to teeth
What is unique about salivary proteins ?
exhibit different bacteria binding proteins when in solution than on the surface
What are immunoglobulins present in saliva as ?
secretory IgA
What is the resting flow rate of IgA ?
33 mg/100 mL
What is the stimulated flow rate of IgA ?
6 mg/100 mL
What is the purpose of antibodies ?
to agglutinate bacteria - removed by swallowing
Which immunoglobulins are present in the GCF and what is their purpose ?
IgG and IgM
activate complement and opsinisation
What are examples of host receptors that bind bacteria ?
PRPs
Stahtherin
What are Proline rich proteins (PRPs) ?
they act in calcium phosphate stabilisation
found in high concentrations in parotid and submandibular saliva
Why are PRPs cyptitopes ?
they change conformation and reveal binding sites that bacteria want to bind to
What are the fucntional domains of PRPs and what do they do ?
N term- binds to Hydroxyapatite
C term binds to Actinomyces, Strep mutans and Sanguinis
What is statherin ?
main funcntion is calcium phosphate stabilisation
binds to hydroxyapatite and bacteria like actinomyces
secreted by parotid and submandibular glands
What does lysozyme do ?
cleaves bacterial cell walls
causes no enzymatic cell degradation
Where can you find lysozyme ?
tears
saliva
sweat
What is the downside of lysozyme ?
not equally effective against all bacteria
oral bacteria are more tolerant of it
What does lactoperoxidase do ?
catalyses the production of hypothiocynate from hydrogen peroxide ( by product of bacterial metabolism) and thiocyanate (in saliva)
What does hypothiocyanate do ?
uncharged so penetrates bacterial cell membranes
inhibits bacterial glycolysis
What does lactoferrin do ?
binds iron and makes it unavailable
What is the acquired enamel pellicle ?
protein film that forms on the surface of enamel
contains salivary glycoproteins and bacterial products
eg. PRPs which allow bacterial adhesion
Which tooth surfaces are available for colonisation ?
fissures
smooth surfaces
approximal
gingival crevice
Is supragingival plaque aerobic or anaerobic ?
aerobix
Where is supragingival plaque present ?
in health on the teeth
in cracks and fissures it can leads to caries
What is the nutrient source of supragingival plaque ?
saliva
Is subginigival plaque aerobic or anaerobic ?
anaerobic
What are significant amounts of subgingival plaque associated with ?
periodontitis
ginigivitis
What is the nutrient source of subgingival plaque ?
gingival crevicular fluid
When does plaque accumulate faster ?
day
Where do pioneer colonisers attach to ?
salivary pellicle
What are environmental factors affecting plaque formation ?
diet
smoking
What are bacterial factors affecting plaque formation ?
co aggregation
bacterial adhesins that recognise the pellicle
What is the cyclic nature of plaque build up ?
initial colonisation- Streptococcus, Actinomyces, Veillonella
Microflora alteration phase- Fusobacterium and Prevotella
Lack of cleaning leads to dental caries and periodontitis
What is the role of the acquired enamel pellicle ?
primary colonising bacteria in plaque attach to it
What are the characteristics of the acquired enamel pellicle ?
1-3 micrometres thick can permeate the outer layer of enamel not easily removed present on most enamel surfaces a deposit of saliva proteins
How is the enamel pellicle formed ?
by the preceipitation of denatured saliva proteins
it is selective- proteins with a high binding affinity bind to the tooth surface
As well as saliva proteins what else does the pellicle contain ?
components of the GCF
oral mucosa and microbial cells
What are the functions of the enamel pellicle ?
lubricant
reduces mobility of calcium and phosphate ions - this stops the dissolution of enamel - demineralisation
prevents inappropriate crystal growth- stops dental calculus
contains enzymes
What is within the pellicle which prevents inappropriate crystal growth ?
statherin and PRPs
Which active enzymes are within the pellicle ?
amylase lysozyme peroxidase carbonic anhydrase glucosyltransferase
What does the pellicle do with bacteria ?
can inhibit and be a substrate for bacterial adhesion
What is within the pellicle that allows bacteria to adherer ?
the salivary proteins have receptors for bacteria
Name some salivary proteins in the pellicle ?
MGI Amylase PRPs Statherin Gp340
Which bacteria are present in initial plaque ?
50% of bacteria in initial plaque are streptococci
What are the human oral streptococci groups ?
mitis
anginosis
salivarius
mutans
What is the mitis streptococcus group ?
the most numerous in the mouth
What is the anginosis streptococcus group ?
commensal but found at abcesses
What is the salivarius streptococcus group ?
generally commensal but also used as probiotics
also found elevated in dental caries
What is the mutans streptococcus group ?
associated with dental caries
found in mature plaque and is not an early coloniser
What is the most abundant bacterium in initial plaque ?
Streptococcus Oralis
What are streptococcal adhesins ?
they are proteins on the surface of oral streptococci that can adhere to receptors on salivary proteins in the pellicle
What is an example of a streptococcal adhesin ?
antigen I/II
What is antigen I/II ?
a large multi domain protein on the surface of oral streptococci
mediates adhesion to the gp340 salivary agglutinin protein in the pellicle
What are the other functions of antigen I/II ?
can bind to to other bacteria like actinomyces
What structural properties allow antigen I/II to bind to other bacteria ?
it has a C-motif that covalently binds to peptidoglycan
What are the pioneer coloniser species ?
actinomyces
veillonella
What are actinomyces ?
gram positive pleimorphic rods
facultative anerobes
harmless but can cause disease
What are veilonella ?
gram negative cocci
strict anaerobes
feed on lactate produced by other oral bacteria
Does veilonella cause disease ?
not associated with disease but elevated in caries
found in supraginigival plaque although its aerobic
How does veilonella survive in supragingival plaque if its anaerobic ?
the surrounding aerobic bacteria use the oxygen so that the environment becomes anaerobic
What is the process of dental plaque formation ?
adhesion to the surface coaggregation coadhesion mature biofilm with matrix dispersal
What is the appearance of mature supragingival plaque ?
stratified
gram positive cocci and short rods a tooth surface with filament towards the outer layers
What does supragingival mature plaque cause ?
causes a shift towards acidogenic/aciduric bacteria
Does the amount of plaque correlate with dental caries ?
no evidence to support correlation
What does accumulation of plaque at the gum line cause ?
irritates tissues and can lead to calculus formation
this leads to gingivitis (reversible)
can progress to periodontitis (irreversible)
accompanied with a change in oral microbiotia
What is present in the subgingival crevice in the mouth ?
few bacteria
anaerobic bacteria- not found elsewhere
asacchrolytic, proteolytic bacteria found here
What do early colonisers support the attachment of ?
bridging organsims
What are bridging organisms ?
they stick to perio pathogens and trigger inflammation of the gingiva
What is an example of a bridging organism ?
fusobacterium nucleatum
What is fusobacterium nucleatum ?
gram negative
proteolytic
anaerobic
long rods
What does fusobacterium nucleatum do ?
forms co aggregates with early coloniseres and later colonisers
invades host epithelial cells
present in high numbers in subgingival plaque
What is supragingival calculus a deposit of ?
saliva
What is subgingival calculus a deposit of ?
serum
What does the rough surface of calculus do ?
trigger inflammation
leading to gingivitis and periodontitis
Where does calculus form ?
near salivary duct opening
What is calculus ?
mineralised plaque
What are sialoliths ?
form in salivary ducts
they are supersaturated Calcium phosphate
What are the mechanisms of enamel loss ?
fracture
caries
erosion
abrasion
What is caries ?
loss of enamel due to bacterial acid production
What is erosion ?
loss of enamel due to dietary acids
What is abrasion ?
loss of enamel due to mechanical wear
What is the main component of enamel ?
biological appatite
What is biological appatite made from ?
Ca
Phosphate
hydroxyl ions
Is biological appatite soluble ?
sparingly soluble
increased solubility at low pH
What happens to pH after a sugar rinse according to stephans curve ?
there is a drop in pH
What happens after the drop in pH ?
after the decrease in pH the pH tries to return to normal
this is the time in which the enamel dissolved as it is exposed to a low pH
What is the critical pH ?
roughly 5.5
this is the pH which under the enamel dissolves quicker
What happens if you rip water on enamel ?
enamel will eventually dissolve
an equilibrium isnt reached as water is always being replaced
fresh water doesnt have any calcium in it - calcium always leaving the tooth
Why doesnt saliva dissolve enamel ?
supersaturated calcium phosphate doesnt come into contact with the enamel as the statherin and PRPs bind to the ions maintaining the enamel
How do you calculate the solubility product ?
the ion concentrations multiplied
the ion concentrations must be multiplied by their respective power
What is the ionic product ?
the same as the solubility product but in solution
If IP>SP ?
solution is supersaturated
unless the ions are stabilised in some way like by stahterin etc
What if SP >IP ?
solution is unsaturated and you get dissolution
What are the 2 ways that calcium hydroxyapatite can dissolve ?
loss of hydroxide ions
loss of phosphate ions
What happens with the loss of hydroxide ions ?
adding acid means hydroxyapatite dissolves phosphate and hydroxyl ions
increasing acid means hydroxyl ions must decrease - pulling out hydroxyl ions to maintain equilibrium
What happens with the loss of phosphate ions ?
hydrogen ions bind to phosphate ions - pulling out phosphate ions
IP drops and SP is higher - dissolution
What is the effect on the critical pH if someone has lower calcium and phosphate concentrations ?
leads to a higher critical pH of about 6.5- this means there is a greater range of pH over which dissolution can occur
The KSP of a sparingly soluble halids is 4x10^8 moles
How many moles of each element will dissolve in a litre of water ?
square root
solubility product is the product of the ion concentrations.
2x10^4
in the global burden of diseases which is the most 2nd prevalent disease ?
Latent tuberculosis
What is the name for the total genetic information in a complex population ?
metagenome
Which of the following species is most strongly acidogenic ?
lactobacillus fermentum
The concept that the total amount of plaque is responsible for dental caries is ?
specific plaque hypothesis
Which of the following species belongs to the mutans group streptococci ?
Streptococcus Sobrinus
At the crtical pH of enamel what is the relationship of the KP to IP ?
KP=IP
In acidic conditions hydroxyapatite dissolves because ions are removed from solution. Which ions are likely to be removed ?
Hydroxide
phosphate
What are the different types of caries ?
primary secondary residual active v inactive early childhood caries
What is early childhood caries ?
presence of one or more decayed missing or filled tooth surfaces in any primary tooth between birth and 71 months
Which type of caries are becoming prominent ?
occlusal, interproximal and EDJ caries ever since the late 19th century
Why is caries set to increase in global prevalence ?
greater longevity and population growth
Which bacteria are commonly acossiated with caries ?
mutans streptococci
lactobacillus
actinomyces
bifidobacterium - scardovia wigiassae
How are the streptococci broken up ?
broken into groups with each group containing differnt species
What bacteria does the mutans group contain ?
strep mutans
strep sobrinus
What are the features of the mutans streptococci ?
gram positive
catalase negative
sacchrolytic
facultative anaerobes
What are the caries associated with streptococci ?
S mutans
S sobrinus
non mutans acossaited low pH streptococci
What are the characteristics of S mutans ?
acidogenic
aciduric
produces glucans from sucrose
What is different about S.Sobrinus comapred to S.mutans ?
more acidogenic
more adherent
Why does Kochs postulates not match up with Strep mutans ?
organism must be present in all cases of disease and not in healthy individuals- this cannot be the case because strep mutans is in 96% of the population and the level rather than the presence is important
Which bacteria are acossiated with early childhood caries ?
bifidobacterium
scardovia wiggisae
they have been isolated on acid agar
What are the characteristics of Scardovia Wiggisiae ?
anaerobic
pleomorphic
gram positive bacilli
sacchrolytic - produces acetic and lactic acid
What is the problem with S mutans ?
it has a low predictive value- there are other species like Prevotella that have a higher predictive value
What are germfree animals ?
no microorganism present in them
used to investigate microbial aetiology
What are examples of virulence factors ?
adhesins
acid production
aciduricity
What are examples of adhesins ?
antigen I/II
glucosyltransferases
aciduricity
How do bacteria remain aciduric ?
DNA repair proteins
protective membrane proteins
How are carbohydrates utilised by bacteria ?
glucose and sucrose make acid and intracellular storage polymers
sucrose also makes exopolysaccharides
How do bacteria uptake sugar ?
polysaccharides are digested
monosaccharides and disaccharides are imported
What is xylitol ?
a sugar substitute
imported, metabolised and knocked out - futile cycle
How is glucose uptake described ?
constitutive
What happens in high sugar conditions ?
lactate is the major product
homolactic fermentation
intracellular polysaccharides are made
What happens in low sugar conditions ?
mixed acid fermentation - heterofermentation
lactate dehydrogenase is inhivited
Intracellular polysacchrides are digested
Why is oxygen important in fermentation ?
it is an important regulator
What are intracellular polysaccharides ?
produced via glucose 1 phosphate when carbohydrates are in excess
make a glycogen type glucan
they are broken down and used for glycolysis in starvation
How do you get greater acid tolerance ?
pre acidification results in greater acid tolerance
What are mechanisms of acid adaptation ?
reduced permeability of cell membrane to protons
induction of proton translocating ATPase
induction of alkali production systems
induction of stress proteins
What are the purpose of stress proteins ?
protect enzymes and nucleic acids from denaturation
What alkali systems are higher in caries free subjects ?
salivary arginine deaminase
urease
What do strep gordonii and strep sanguinis do with urease ?
arginine breaks down to urea by arginase
urea broken down to carbon dioxide and ammonia bu urease
What do strep salivarius and actinomyces do with arginine deaminase ?
arginine broken down citrulline releasing ammonia
citrulline enters the carbomoyl phosphate cycle releeasing ammonia
What are the macromolecules that form the basic structure of the matrix ?
polysaccharides
proteins
nucleic acids
What do the macromolecules do ?
form a scaffolding
What are the small molecules that are trapped in the matrix ?
nutrients
signalling molecules
trace metals
What are exopolysaccharides ?
polymers made of sugar residues that are secreted by a microorganism into the environement
What are the 2 types of exopolysaccharides ?
glucans and fructans
What are glucans made by ?
glucosyltransferase
What are fructans made by ?
fructosyltransferases
What are glucans ?
polymer of glucose formed outside the cell using sucrose as the substrate
Why is sucrose the substrate for glucan synthesis ?
contains a high energy glycosidic bond
What are 2 examples of fructan polymers ?
inulins and levans