L85-L88 Flashcards
Fungi are ___ cells; bacteria are ___ cells.
Eukaryotic; prokaryotic
What are two unique features of fungi that distinguish them from human eukaryotic cells?
- Chitin (rigid cell wall)
2. Ergosterol (predominant sterol)
What is budding?
Asexual fungal reproduction of single-celled yeasts
How do fungi with hyphae reproduce?
Asexually - bits of the hyphae break off and continue to grow as separate entities, or form stalks containing spores
How do fungi produce spores?
Sexually - two mating cells from hyphae of different strains fungi can mate by fusing together and forming a spore stalk
A solitary yeast cell can morph into either a ___ or ___.
Germ tube; blastoconidia
What do germ tubes become?
True hyphae with septa
What do blastoconidia become?
Pseudohyphae
What is the collective term for a mass of hyphae?
Mycelium = mold
What is the difference between sporangium and conidiophore?
Sporangium: enclosed sac containing spores
Condidiophore: specialized hyphal structure that bear conidia (spores)
What are arthroconidia?
Small barrel shaped structures that become spores by breaking off from hypha at septation points
What are chlamydoconidia?
Spores at the end of hyphae; contains stored food
What are macro and microconidia?
Small and large types of conidia in a fungus
What are dimorphic fungi?
Fungi that are yeast-like at 35 C and mold-like at 25 C
What are 4 important examples of dimorphic fungi?
- Histoplasma capsulatum
- Blastomyces dermatitidis
- Coccidioides immitis
- Sporothrix schenckii
How are fungi transmitted?
- Person-to-person (Athletes’ s foot)
- Contact with environment (inhalation of spores, traumatic inoculation)
- Contact with animals (poop, skin/hair)
Fungal ___ mediate colonization of epithelial surfaces.
Adhesins
What are some examples of fungi invading natural barriers?
- Trauma (rose thorns)
- Inhalation of spores (Coccioides in dust)
- Breakdown of mucosal barriers (catheters)
What are some examples of fungi avoiding phagocytosis?
- Histoplasma multiply in macrophages
2. Cryptococcus has a capsule
What type of host immunity is required to eradicate infection with fungi?
Cellular immunity (humoral is not protective)
What is the most common opportunistic fungal pathogen?
Candida
Where is Candida normal flora?
GI and GU tracts
How does Candida appear in body fluids?
Oval budding yeasts
How does Candida appear in tissues?
Yeasts with pseudohyphae
What two species of Candida have germ tubes?
C. albicans
C. dubliniensis
C. dubliniensis typically infects what patient population?
Patients who are HIV-positive
Which two species of Candida are resistant to fluconazole?
C. glabrata
C. krusei (intrinsic resistance)
What type of Candida is associated with UTIs?
C. glabrata
In addition to adherence to mucosal cells, how does Candida invade the host?
Production of lytic enzymes to facilitate invasion of epithelial surfaces
What are important host defense mechanisms against Candida?
- Intact skin
- Normal bacterial flora
- Recognition of cell wall mannan, which activates the alternate complement pathway and leads to Ab formation
- Neutrophils and macrophages
Mucocutaneous forms of candidiasis are associated with defects in ___, while system spread is generally associated with ___.
Cell-mediated immunity; neutropenia
What are risk factors for infection with Candida?
- Antibiotic therapy
- Steroids
- Decreased T cell function
- Diabetes
What are the major clinical manifestations of Candida?
- Skin and nail infections
- Mucocutaneous infection (thrush)
- Vulvovaginal
- Chronic mucocutaneous candidiasis (disfiguring rash)
- Candida endopthalmitis (blindness)
- Candida Esophagitis
- Systemic infections
What is chronic mucocutaneous candidiasis?
Hereditary immunodeficiency disorder due to malfunction of T cells
What are the two forms of Candida endopthalmitis?
- Exogenous - trauma/surgery leads to direct inoculation of anterior chamber
- Endogenous - candidemia with seeding of retina and choroid
How is Candida albicans diagnosed in the lab?
- Gram stain - produces clusters of round blastoconidia along the hyphae; can also see pseudo and true hyphae
- Calcofluor - white fluorescent brightener that binds chitin
- Sabouraud dextrose agar - white to cream-colored, pasty, smooth colonies
- Production of germ tube
Aspergillus is a rapidly growing mold found in ___, ___, and ___.
Soil; air; construction dust
Describe the shape and appearance of Aspergillus.
Dichotomous branching (Y-shape, acute angle) and septate hyphae
Discuss the pathogenesis of Aspergillus.
- Inhale spores.
- Spores bind to fibronectin
- Inhibition of alternate complement
What are the clinical manifestations of Aspergillus?
- Allergic aspergillosis
- Fungal ball
- Invasive aspergillosis
- Dissemination infection
- Angioinvasion
Describe the color and structure of Aspergillus fumigatus.
Blue-green and fluffy
___ refers to angiotropic infection produced by various fungi.
Mucormycosis
Where are agents of mucormycosis found?
Fruit, bread, soil, decaying organic debris
The species most commonly associated with mucormycosis is ___.
Rhizopus arrhizus
Discuss the pathogenesis and prognosis of infections with R. arrhizus.
Invade major blood vessels, cause ischemia/necrosis/infarction, produce black pus
Acute, rapidly fatal
What are some host risk factors for mucormycosis?
- Acidotic diabetes
- Malnourished children
- Severe burns
- Severe leukopenia
- Immunosuppressive disorders
- Steroids
Discuss the pathogenesis of mucormycosis.
Inhalation and deposition of spores in the nasal turbinates or direct inoculation of abraded skin
What are the clinical manifestations of mucormycosis?
- Rhinocerebral mucormycosis
- Pulmonary
- GI tract
- Cutaneous
- Dissemination
- Periorbital mucormycosis (may invade brain cavity)
What populations most frequently experience rhinocerebral mucormycosis?
People with diabetes/ketoacidosis
How does rhinocerebral mucormycosis present?
Face/eye pain, proptosis, progressive signs of involvement of orbital structures; results in death
What populations most frequently experience pulmonary syndromes related to mucormycosis?
People with neutropenia
What populations most frequently experience GI syndromes related to mucormycosis?
Patients with severe malnutrition
What are the treatment strategies for mucormycosis?
- Early diagnosis
- Reverse underlying risk factors (immunosuppression, hyperglycemia)
- Debridement
How is mucormycosis diagnosed in the lab?
- Broad, ribbon-like hyphae with 90 degree irregular branching
- Wooly white/grey growth
- Characteristic sporangia
Fungal infections of keratinized tissues are typically caused by ___.
Dermatophytes
What is onychomycosis?
Nail infections caused by any fungus
Transmission of dermatophytosis requires what?
Close personal contact
What are the 3 genera of dermatophytes?
- Epidermophyton
- Microsporum
- Trichophyton
Describe tinea pedis.
Athlete’s foot, most common dermatophyte infection
Weeping, peeling lesion between 4th and 5th toes; scaling, fissuring, maceration, erythema, itching, burning
Describe tinea capitis.
Dermatophytosis of scalp due to invasion of hair
Hair becomes dull, lusterless, breaks near the follicle
Describe tinea corporis.
Dermatophytosis of glabrous skin (face, shoulder, arms)
Classic ringworm
Describe tinea cruris.
Infection of groin, perineum, scrotum, perianal area
More common in men
Erythema, pustule formation, hyperpigmentation, itching, burning
Discuss the pathogenesis of dermatophytes.
Inoculation via minor trauma, penetration of stratum corneum, proliferation, lateral spread
How is dermatophytosis diagnosed in the lab?
- KOH preparation
2. Examine hair under Wood’s light
Describe the shape of Cryptococcus neoformans.
Round (not oval) with polysaccharide capsule
Where is C. neoformans found?
Worldwide, pigeon poop, soil
C. gattii is endemic to what locations?
SoCal, Mexico, Pacific Northwest
What does a positive skin test for Cryptococcosis indicate?
Exposure (not illness)
Discuss the pathogenesis of Cryptococcosis.
Inhalation from environment to lungs, from there to CNS
Capsule blocks complement
What are the clinical manifestations of Cryptococcosis?
Meningoencephalitis
What are the symptoms of meningoencephalitis?
Headache, nausea, gait abnormalities, dementia, irritability, CN abnormalities, hydrocephalus, fever, nuchal rigidity, coma, death
What types of skin lesions may be seen in Cryptococcosis?
Raised skin lesions with dissemination
How is Cryptococcosis diagnosed in the lab?
- Fast growing, soft, mucoid, cream/pink/yellow-brown
- Encapsulated yeast in India ink preparation
- Standard: flow assay/latex agglutination for Ag detection
- Gram stain
- GMS
- Mucicarmine stain
How is C. neoformans differentiated from other forms of Cryptococcus?
Ability to grow at 37 degrees C
Where is Histoplasma capsulatum found?
Soil, bird/bat droppings
Where is H. capsulatum found in the world?
OH/Mississippi River Valleys
Describe the yeast and mold phases of H. capsulatum.
Yeast: found in macrophages
Mold: tuberculate macroconidia
No capsule
What are the clinical manifestations of H. capsulatum?
- Asymptomatic
- Pulmonary (infiltrates, lymphadenopathy, cavitating lesion, fever/night sweat/weight loss)
- Disseminated
Discuss the pathogenesis of H. capsulatum.
Conidia inhaled, convert to yeast, which are phagocytosed by macrophages
Infection of RES by yeasts growing in macrophages
What is the primary lesions seen in H. capsulatum?
Granuloma in the lung
How is Histoplasmosis diagnosed?
- Standard: urine antigen test
Can do skin test and bone marrow culture
__ budding yeast cells are typical in H. capsulatum.
Intracellular
H. capsulatum predominates at the ___ portion of lesions.
Central
Describe H. caspulatum at 25 C.
- Slow growing
- Granular to cottony
- White, then buff brown
- Hyphae are septate and hyaline
- Macro and microconidia
Describe the yeast and mold forms of Blastomyces dermatitids.
Yeast: large thick walled with broad based buds
Mold: not unique
Where in the US is Blastomyces dermatitidis found?
Central US
Blastomyces dermatitidis is associated with ___ and ___.
Soil; wood
What are the clinical manifestations of Blastomyces dermatitidis?
- Pulmonary - acute or chronic pneumonia
- Skin lesions
- Lytic bone lesions
- Disseminated disease
Describe the appearance of Blastomycoces dermatiditis at 25 C.
Membranous texture
White to beige
Septate hyaline hyphae and unbranched short conidiophores
Look like lollipops
Describe the appearance of Blastomycoces dermatiditis at 37 C.
Appears as budding yeast cells with a double-contoured refractile wall and broad base budding
Where in the US is Coccidiodomycosis found?
SW US
Describe the yeast and mold forms of Coccidiodes.
Tissue: spherule filled with endospores
Culture: mold with barrel shaped arthroconidia
Which type of Coccidiodes is found in CA and which is found outside CA?
In CA: C. immitis
Outside CA: C. posadasii
Discuss the pathogenesis of Coccidioides.
Inhalation of arthroconidia bypasses upper airway into alveoli
Monocytes ingest; arthroconidia convert to spherules
What are the clinical manifestations of Coccidiomycosis?
Fever, cough, chest pain, malaise
Dissemination
Erythema nodosum
How is Coccidiomycosis diagnosed in the lab?
- Microscopic exam to detect spherules
- Culture - demonstrate alternating arthroconidia
- Skin test
- Serology
What are two causes of subcutaneous mycoses?
- Sporotrichosis
2. Chromoblastomycosis
Describe the yeast and mold forms of Sporothrix schencki.
Yeast: cigar-shape
Mold: daisy-like conidiophore
Where is Sporothrix schenckii found?
Soil, rose thorns, moss
What are the clinical manifestations of Sporotrichosis?
Papular skin lesions that enlarge and ulcerates, appearance of subcutaneous firm nodules
Discuss the pathogenesis of Sporothrix.
Inhalation or traumatic inoculation, multiplication, pyogenic/granulomatous response, spread via lymphatics
What is a post-traumatic chronic infection of subcutaneous tissue and how does it appear?
Chromoblastomycosis; verrucous cauliflower-like papules on lower extremities
How does Chromoblastomycosis appear on histology?
Copper pennies
Only ___% of people infected with TB develop disease in their lifetimes. The remainder have ___ infections.
7-10; latent
Of those who are infected with TB, ___% of patients with AIDS will develop active disease per ___.
10; year
Who is at risk for being infected with TB?
- Close contacts
- Foreign-born persons from areas where TB is common
- Medically underserved, low income populations
- Residents of long-term care facilities
- Persons who inject drugs
- Migrant farm workers and homeless persons
- Occupationally exposed persons
Who is at risk for progressing to disease with TB?
- People with HIV
- People who were recently infected with TB
- Certain medical conditions
- Injection drug use
- History of inadequately treated TB
How is TB transmitted?
Airborn
True or false - extrapulmonary TB is rarely contagious.
True
Discuss the pathogenesis of TB.
Pathogen gains access to alveolar macrophages, proliferates, and spreads via lymph nodes and blood.
What is the primary site of lung infection in TB?
Ghon focus
What is the Ghon focus + mediastinal lymph nodes?
Ghon complex
What is a calcified Ghon complex?
Ranke complex
The vast minority of secondary (reactivation) TB disease is ___.
Extrapulmonary (most are pulmonary)
What is seen on CXR in TB?
Upper lung field infiltrates, cavities
What are common sites of extrapulmonary TB?
Brain, epiphyses of long bones, kidneys, vertebral bodies, lymph nodes
In immunocompetent patients, ___% have pulmonary TB. ___% have XPTB. What about patients with AIDS?
85; 15
1/3 - pulmonary
1/3 - XPTB
1/3 - both
Which type of XPTB is most common in children? Which type is most common in older patients?
Children - CNS TB
Older patients - TB pericarditis
What is osteomyelitis of the spine (TB)?
Pott’s disease
What are the groups of non-TB mycobacteria?
Group 1: photochromogens
Group 2: scotochromogens
Group 3: nonphotochromogens
Group 4: rapid growers
Where is NTM found?
Bioaerosols, water, soil
What are predisposing conditions for NTM lung disease?
Structural lung abnormalities (COPD, bronchiectasis, IPF, chest radiotherapy, congenital cystic abnormalities, previous pulmonary emboli/infarct, recurrent aspiration pneumonia)
How does NTM infection contrast with TB?
- NTM is environmental in origin (not human-to-human)
- NTM requires an underlying predisposition
- NTM does not have a prolonged latent phase
- NTM infections do not disseminate outside the lungs
- No skin/Quantiferon testing for NTM
- CXR presentations of NTM may differ from TB
What are the most common infections in the US?
URIs
What are the syndromes included under the designation of URI?
- Rhinitis
- Sinusitis
- Otitis
- Pharyngitis
- Laryngotracheitis
- Epiglotitis
- Bronchitis
The vast majority of URIs are ___ and ___.
Viral; self-limited
Rhinitis refers to a “___.”
Runny nose
What are some causes of rhinitis?
Infections, allergies, over-use of nasal decongestants, systemic disease
Infectious rhinitis = “___.”
The common cold
What are the etiologic agents in the vast majority of infectious rhinitis cases?
Viruses
Acute sinusitis is commonly preceded by ___.
Acute or chronic rhinitis
What is an important contributor to the pathogenesis of acute sinusitis?
Impaired drainage of the sinuses by inflammatory edema of the mucosa
What are the clinical symptoms of acute sinusitis?
Congestion, sinus tenderness, fevers, purulent nasal drainage
90% of acute sinusitis cases are caused by viruses. What are the bacterial causes?
Bacteria in the oronasal cavity - S. pneumoniae, H. influenzae, Moraxella, oral anaerobes
If there is strong suspicion of bacterial sinusitis, what antibiotics should be given?
Ampicillin
Amoxicillin
Bactrim
Augmentin (amoxicillin-clavulanate)
How do patients with pharyngitis present?
Sore throat and fever
70% of pharyngitis cases are caused by viruses. What bacteria can cause this?
Group A or B Strep - Strep throat - high fevers and patchy tonsillar exudates
Epiglottitis occurs most often in ___. How do they present?
Children age 2-7
High fever, sore throat, drooling, sitting upright, signs of systemic toxicity
Why might epiglottitis become a medical emergency?
Swelling can lead to airway obstruction
What can be seen on CXR in epiglottitis?
Thumb sign (enlarged epiglottis protruding from the anterior wall of the hypopharynx)
What are the most common etiologic organisms of epiglottitis?
H. influenzae
GAS
H. parainfluenzae
How is epiglottitis treated?
Assess/secure airway
Augmentin (amoxicillin-clavulanate)
Unasyn (ampicillin-sulbactam)
3rd gen cephalosporin
What is the typical presentation of acute bronchitis?
Cough with purulent sputum production for 5+ days
Acute bronchitis is most commonly caused by viruses. What are common bacterial agents?
Mycoplasma
S. pneumoniae
H. influenzae
B. pertussis
What is the treatment for acute bronchitis?
Supportive care
Not cough syrups, anti-tussives, or mucolytics (don’t work)
What is a lower airway infection/inflammation?
Pneumonia
What are the 5 possible routes for pathogens to reach the lower airways?
- Direct inhalation
- Aspiration of upper airway contents
- Spread along the mucous membrane surface
- Hematogenous spread
- Direct penetration (rare)
What are risk factors for developing pneumonia?
- Old age
- Underlying pulmonary disease
- Smoking
- Recent viral illness
- DM
- CKD
- Immunodeficiency
What are the symptoms of pneumonia?
Cough, sputum production, shortness of breath, fever
Elderly patients may not have this typical constellation and may present with mental status changes/not acting quite themselves
What are signs of pneumonia on exam?
Crackles, rhonchi, increased bronchial breath sounds, vocal fremitus, dullness to percussion over the areas of consolidation, leukocytosis
What will CXR show in pneumonia?
Focal infiltrate, maybe air bronchograms
What is the difference between bronchopneumonia and lobar pneumonia?
Bronchpneumonia: patchy, >1 lobe, infection starts in bronchioles and spreads to parenchyma
Lobar: contiguous, 1 lobe, S. pneumo
What are the 7 syndromes of pneumonia?
- Community-acquired bacterial
- Community-acquired viral
- Nosocomial
- Aspiration
- Chronic
- Necrotizing/abscess
- Immunocompromised host
What are the common etiologic agents of community acquired bacterial pneumonia?
Common: S. pneumo, H. flu, M. catarrhalis, S. aureus
Less common: Mycoplasma pneumoniae, Chlamydia pneumonia, Legionella pneumophilia - cause “walking pneumonia”
How is Legionella diagnosed?
Urinary antigen
How do patients who have community acquired bacterial pneumonia with S. pneumoniae present?
Fever, shaking chills (single chill), rusty colored sputum, dyspnea, pleuritic chest pain
How is community acquired bacterial pneumonia treated?
Outpatient: macrolides or doxycycline
Outpatient with comorbid illness/recent antibiotic therapy - respiratory FQ
Inpatient: macrolid + beta lactam
At least 5 days
What are the most common viral causes of pneumonia?
Influenza
RSV
Adenovirus
Parainfluenza
What are the symptoms of influenza?
Fever, cough, headache, sore throat, feel MISERABLE
What are the antiviral therapies to treat influenza?
Oseltamivir
Zanamivir
How do children with community acquired pneumonia present?
Tachypnea, fever, mild cough, dyspnea
What tends to cause community acquired pneumonia in children under 2?
Viral
What tends to cause community acquired pneumonia in children 5-10?
Mycoplasma
What tends to cause community acquired pneumonia in children 10-16?
S. pneumoniae, Chlamydia
What are the common etiologic agents of nosocomial pneumonia?
K. pneumoniae E. coli Enterobacter Proteus Serratia Pseudomonoas Acinetobacter MRSA
What is the treatment for nosocomial pneumonia?
Anti-pseudomonal cephalosporin
Anti-pseudomonal carbapenem
Beta lactam + beta lactamase
Add Vancomycin if MRSA is concerning
Who typically gets aspiration pneumonia?
Debilitated patients
Loss of gag/swallow reflex
Repeated emesis
What organisms are involved in aspiration pneumonia?
Polymicrobial - mix of GN aerobes and anaerobes
How is aspiration pneumonia treated?
Beta lactam + beta lactamase
3rd generation cephalosporin + metronidazole
What characterizes chronic pneumonia?
Subacute onset of symptoms of 6+ weeks
What causes chronic pneumonia?
Slow growing organisms (mycobacterium, nocardia, actinomyces)
Endemic fungi (Histoplasmosis, Blastomycosis, Coccidiomycosis)
Coxiella
Tularemia
Obstructed airway
What can cause abscess pneumonia?
Necrotizing pneumonia (S. aureus, S. pneumo, Klebsiella, Pseudomonas)
Aspiration
Tooth abscess
Septic emboli
What bugs can cause abscess pneumonia?
Fusobacterium
Bacteroides
Peptostreptococcus
Aerobic/anaerobic strep and GN rods
How is abscess pneumonia treated?
Piperacillin-tazobactam (Zosyn)
Clindamycin
4-6 weeks
What are causes of neutrophil dysfunction?
Chemo, leukemia, CGD
What organisms lead to pneumonia in people with neutrophil dysfunction?
GN rods
Staph
Aspergillus
Candida
What are causes of T cell dysfunction?
AIDS
T-cell lymphoma
Solid organ transplant
DiGeorge syndrome
What organisms lead to pneumonia in people with T cell dysfunction?
CMV Herpes Simplex Virus Pneumocystis Listeria Candida Aspergillus Cryptococcus Mycobacteria
What are causes of B cell dysfunction?
Splenectomy
Lymphoma
Myeloma
Gamma globulin deficiency
What organisms lead to pneumonia in people with B cell dysfunction?
S. pneumo H. flu Neisseria Klebsiella E. coli Giardia
Exposure to bat or bird droppings may lead to pneumonia with ___.
Histoplasma capsulatum
Exposure to birds may lead to pneumonia with ___.
Chlamydophila psittaci
Exposure to rabbits may lead to pneumonia with ___.
Rabbits
Exposure to farm animals may lead to pneumonia with ___.
Coxiella burnetti
Hotel or cruise ships may lead to pneumonia with ___.
Legionella
Travel to SW USA may lead to pneumonia with ___.
Coccidiosis
Structural lung disease may lead to pneumonia with ___.
Pseudomonas
Alcoholism may lead to pneumonia with ___ or ___.
Anaerobes; Klebsiella