AA and protein metabolism Flashcards

1
Q

THF

A

Tetrahydrofolate

Carries and transfers one-carbon units

Composed of pteridine ring + PABA + glutamate tail

Source: Dietary folate (B9) is reduced to dihydrofolate and then to THF by dihydrofolate reductase (DHFR)

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2
Q

Impairment of enzyme in THF derivative pathway

A

THF can accumulate in one form while the other form becomes deficient.

Sxs similar to dietary folate deficiency, but do not respond to folate supplementation.

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3
Q

B12 deficiency can cause what type of anemia?

A

Megaloblastic anemia, because THF becomes “trapped” as 5-CH3-THF (methionine synthase requires B12 to convert to THF) so the THF needed for thymidine synthesis can’t be produced in sufficient quantities to sustain DNA replication required for RBC production from precursors in bone marrow.

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4
Q

Folate deficiency

A

Neural tube defects - folate is crucial in DNA synthesis that is required for rapid cell division during early fetal development

Megaloblastic anemia - large dysfunctional immature RBC’s (Dx - low serum folate, elevated homocysteine)

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5
Q

Folate analogues

A

Used in the Tx of conditions characterized by rapidly dividing cells

Methotrexate - used to Tx various cancers, autoimmune disorders and ectopic pregnancies

Treimethoprim - used in combo with sulfamethoxazole (i.e. jirovecii pneumonia)

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6
Q

S-adenosylmethionine (SAM)

A

Acts as a methyl group donor (i.e. DNA methylation and neurotransmitter synthesis)

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7
Q

Clinical relevance of SAM metabolism

A

Homocysteinemia/Homocystinuria (elevated HomoCys in blood and urine)

-Associated with increased risk of cardiovascular disease and thromboembolisms

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8
Q

When is Homocysteine produced?

A

Whenever s-adenosylmethionine is used as a methyl donor

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9
Q

Metabolic fates of HomoCys

A
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10
Q

Causes of homocysteinemia/homocystuinuria

A
  1. Deficiency of cofactor (B12, folate, or B6) required for HomoCys metabolism
    -If folate or B12 deficient, HomoCys cannot be converted to Met - HomoCys conc. increases, Met conc. decreases, Cys may increase as HomoCys is shunted to the other pathway (Tx with folate/B12 supplementation)
    -If B6 is deficient, HomoCys cannot be converted to Cys - HomoCys accumulates, Cys conc. decreases, Met levels increase as HomoCys is shunted to the other pathway (Tx with B6 supplementation)
  2. Inherited deficiency of the enzymes of methionine cycle

-Autosomal recessive
-Sxs: tall stature, lens dislocation, thromboemoblisms, intellectual disability - variable expressivity
-Dx: ↑↑homocysteine, ↑↑methionine ↓cysteine in blood and urine. Genetic testing.
-Tx: Low-methionine diet, B6 supplementation, Cys becomes and essential AA

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11
Q

Pernicious anemia (PA)

A

Type of megaloblastic anemia due to an inability to properly absorb and utilize dietary B12

-Caused by lack of intrinsic factor (IF), which is producted by the parietal cells in the stomach and is essential for absorption of B12 in the small intestines

More common in the elderly (IF decrease with age)

Bariatric surgery and PPIs can cause IF deficiency that results in pernicious anemia

Vegans at risk

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12
Q

Organic acidemias

A

Rare inherited metabolic disorders due to inability to properly process specific amino acids or odd numbered fatty acids

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13
Q

Catabolism of ______ converge at priopionyl-CoA

A

Catabolism of Val, Ile, Thr, Met, odd-chain fatty acids and cholesterol (C-VOMIT)

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13
Q

Propionyl-CoA carboxylase (PCC)

A

Converts propionyl-CoA to methylmalonyl-CoA

Requires biotin (B7)

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14
Q

Propionic Acidemia (PA)

A

Build up of propionic acid in the blood

Caused by mutations in propionyl-CoA carboxylase - PCC (autosomal recessive)

Newborn sxs: metabolic acidosis, lethargy, poor feeding, vomiting, developmental delay (death if no intervention)

Organic acids, particularly PA and MMA, inhibit N-acetylglutamate synthase (NAGS). NAGS produces N-acetylglutamate, an essential activator of CPS I, the first enzyme in the urea cycle. This leads to hyperammonemia, which can cause severe neurological damage.

Management: Low-protein diet, supplementation with biotin and carnitine, NH3 scavengers

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15
Q

Methylmolonyl-CoA mutase (MUT)

A

Converts methylmalonyl-CoA to succinyl-CoA

Requires B12 (MUT and methionine synthase are the only two enzymes that require B12)

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16
Q

What enzymes require B12 as coenzyme?

A

Methylmalonyl-CoA mutase (MUT) and methionine synthase

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17
Q

Methylmalonyl acidemia (MMA)

A

Accumulation of methylmalonic acid in blood

Mutations in MUT genes, or in very rare cases, mutations in genes involved in B12 metabolism

Inheritance: autosomal recessive

Sxs: same as for newborns with propionic acidemia

Management: Strict diet that is low in Val, Ile, Thr, and Met. Carnitine supplement. B12 supplement for MMA due to defects in B12 metabolism.

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18
Q

Maple Syrup Urine Disease (MSUD)

A

Caused by mutations in branched-chain alpha-keto acid dehydrogenase (BKCD) genes - four genes

Inheritance: autosomal recessive

Accumulation of BCAA’s - (Val, Ile, Leu) and their corresponding toxic keto acids.

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19
Q

How are BCAA’s toxic in MSUD?

A

Increased conc. of BCAA’s impairs large neutral AA transport (i.e. tyr, trp) into the brain -> decreased catecholamines, serotonin

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20
Q

Sxs of MSUD

A

Newborns with poor feeding, vomiting, lethargy, dystonia, and a characteristic maple syrup urine ordor. Eventually seizures, apnea, cerebral edema.

Brain damage, coma, and death without prompt intervention

Management: Strict diet (low BCAA formula), thiamine supplementation

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21
Q

Dx maple syrup urine disease (MSUD)

A

Newborn screening for elevated plasma BCAAs

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22
Q

Dx MMA

A

Dx: Increased MMA in serum and urine (can also have increased propionic acid levels). Newborn screening for elevated methylmalonyl-CoA derivative, methylmalonylcarnitine

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23
Q

Dx propionic acidosis

A

Increased propionic acid in urine and serum.

Newborn screening for elevated levels of a propionyl-CoA derivative, propionylcarnitine (conjugation w/ carnitine is an alternative pathway activated to help remove excess propionyl-CoA)

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24
Tyrosine synthesis
Produced from phenylalanine Phenylalanine hydroxylase (PAH) Requires tetrahydrobiopterin (BH4) which is convered to dihydrobiopterin (BH2) BH2 reductase regenerates BH4 from BH2
25
Phenylketonuria (PKU)
Mutations in PAH (97% of cases) or BH2 reductase Sxs: Neonatal onset with intellectual disability, sezures, light skin/hair, mousey/musty odor -Phe is converted to phenylpyruvate and phenylacetate leading to a musty odor -Phe impairs large neutral AA transport into brain -> decreased catecholamine and serotonin -> neurological sxs Dx: screen for phenylalanine elevation
26
Aspartame and PKU
Aspartame contains phenylalanine (Asp-Phe methyl ester)
27
PKU management
Low phe diet, tyrosine supplementation (without PAH, tyr becomes an essential AA) **Kuvan** (sapropterin): synthetic tetrahydrobiopterin **Palnziq** (pegvaliase-pqpz): SQ injectable recombinant phenylalanine ammonia lyase (PAL) enzyme (converts phe to ammonia and tran-cinnamic acid to lower blood phe levels)
28
Maternal PKU
Excess Phe in mother can affect the fetus, potentially leading to intellectual disabilities, growth problems, and developmental delays (even if the fetus is heterozygous)
29
Tyrosine Catabolism
Produces homogentisic acid (HGA) (aka alkpton)
30
Alkaptonuria
Accumulation of HGA in urine Inheritance: autosomal recessive sxs: HGA accumulates and is deposited in connective tissue, leading to darkening of the skin, cartilage, and other tissues (ochronosis). HGA is also exreted in the urine, causing it to turn dark brown or black when exposed to air (alkaptonuria is also called dark urine disease). Over time, alkaptonuria can lead to progressive, degenerative arthritis Dx: dark urine upon standing, elevated HGA in urine ## Footnote Management: Dietary protein restriction, pain management for arthritis
31
What are catecholamines derived from?
Tyrosine
32
What are the catecholamines?
Dopamine/Epi/Norepi ## Footnote In CNS - neurotransmitters PNS - neurotransmitters and hormones
33
Pathway of catecholamine synthesis | List products of each step
Tyr -> DOPA -> Dopamine -> Norepinephrine -> Epinephrine ## Footnote Primarily occurs in the NS and adrenal medulla
34
Tyrosine Hydroxylase
Catalyzes tyrosine to DOPA (requires tetrahydrobiopterin - BH4) Rate-limiting step of catecholamine synthesis
35
Catecholamine Synthesis | Diagram
36
Most common cause of albinism
Deficiency of tyrosinase (autosomal recessive) Lack of pigmentation/Vision impairments
37
What important biomolecules are derived from tryptophan?
Serotonin and melatonin
38
What is melanin derived from? ## Footnote Where is it found?
Tyrosine (Tyr -> DOPA -> Dopaquinone ->->-> melanin) Tyrosinase catalyzes the first two steps ## Footnote Only found in melanocytes
39
Function of tyrosinase in melanin production
Tyrosine to DOPA: Hydroxylation of tyrosine to L-DOPA (uses copper not BH4 as cofactor) DOPA to dopaquinone: Oxidation of L-DOPA to dopaquinone ## Footnote Tyrosinase is a rate-limiting enzyme for the conversion of tyr to melanin
40
Synthesis pathway of serotonin and melatonin
Trp -> 5-hydroxytryptophan (5-HTP) -> Serotonin -> Melatonin
41
Key enzyme in serotonin/melanin synthesis
Tryptophan hydroxylase (Trp -> 5-HTP) Requires tetrahydrobiopterin (BH4) **Rate-limiting and regulatory step** ## Footnote Deficiency of this enzyme linked to depression, anxiety, and sleep disorders
42
Niacin
B3 derived from tryptophan Pathway isn't sufficient to meet body's needs, niacin from dietary sources is essential
43
Why can B12 deficiency simultaneously cause homocysteinemia, megaloblastic anemia, and methylmalonic acidemia?
Because methionine synthase and methylmalonyl-CoA mutase both require B12
44
Tetrahydrobiopterin
BH4: cofactor for hdyroxylation reactions, converted to BH2 BH2 converted back to BH4 by BH2 reductase to sustain further hydroxylation reactions
45
BH2 Reductase Deficiency
46
Pathways of homocysteine metabolism
47
Study this
Same thing
48
How can isoleucine enter the TCA cycle?
As acetyl CoA or succinyl CoA
49
What cofactors does the branched chain alpha-keto acid dehydrogenase complex (BCKDC) require?
Five cofactors: thiamine (B1), lipoic acid, CoA (B5), FAD (B2), and NAD (B3) TLC For Nancy Thiamine/Lipoic acid/CoA/FAD/NAD ## Footnote Deficiency of BCKDC = Maple syrup
50
AA metabolism that requires tetrahydrobiopterin
51
Only strictly ketogenic amino acids
Leucine and lysine
52
B12 for Met B6 for Cys
53
cystathionine beta-synthase
54
An inability to synthesize tetrahydrobiopterin (BH4) would result in decreased levels of which of the following?
Serotonin
55
Methotrexate, which is used to treat cancer and to slow the immune response in treating arthritis, is an analogue of which of the following?
Folate
56
Epinephrine and melanin are derived from which of the following amino acids?
Tyrosine
57
A mother with a 3-month-old baby tells you (the pediatrician) that the infant is lethargic and has poor suckling and seems uninterested in eating. In addition, the mother notes that the baby's diapers often smell like maple syrup. This infant likely has a defect in which of the following enzymes?
branched-chain α-keto acid dehydrogenase
58
A 40-year-old patient presents to the clinic with complaints of darkening urine, particularly noticeable after it has been exposed to air. The patient has also noticed that their skin, sclera (white of the eye), and the cartilage of their ears have become progressively darker over the years. Physical examination reveals dark pigmentation in the mentioned areas. Laboratory analysis of the urine shows that it darkens upon exposure to air and turns black when alkaline solutions are added. This patient's condition is likely the result of which of the following?
Homogentisate 1,2-dioxygenase deficiency aka alkaptonuria
59
A 2-month-old child is brought to the emergency department by parents who report a history of poor feeding, vomiting, and developmental delays. The child appears pale, lethargic, and irritable. Laboratory tests reveal metabolic acidosis, anemia, and elevated levels of methylmalonic acid in the blood and urine. Further testing will most likely confirm a deficiency in which enzyme?
methylmalonyl-CoA mutase
60
Why does high phenylalainine conc. prevent myelination in Pt's with PKU?
Becuase elevated levels of Phe will disrupt AA transport ## Footnote Neutral transporter becomes "clogged" with phenylalanine and other AA's are unable to bind with transporter - Kmm for Phe to transporter is ~0.3 µmol/L whereas other neutral AA's are around 1-1.5 µmol/L
61
Overview of purine/pyrimidine synthesis
## Footnote Includes the de novo pathways and the purine salvage pathway
62
How is ribose-5-phosphate made?
From the HMP shunt
63
Cystathionine synthase deficiency presentation
**Homocystinuria** Stroke, Marfanoid habitus (tall, high-arched palate, arachnodactyly), inferonasal lens subluxation, and intellectual disability. **Homocysteine is thrombogenic** - predisposition to thromboembolic events | **Caused by decreased affinity of cystathionine synthase to bind B6** ## Footnote Can be Tx'd by supplementation of B6
64