Repetitive DNA Part 4 Flashcards

1
Q

Transposition

A
  • moves mobile genetic elements between non homologous sites in the genome

1) to different places within one chromosome
2) between 2 chromosomes

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2
Q

what is responsible for a large fraction of the evolutionary change in a genome

A
  • mobile elements
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3
Q

each mobile element contains

A
  • an enzyme that mediates its own movement - transposase

- special sites upon which the enzyme acts - to mobilize the transposons

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4
Q

transposons

A
  • transposable elements
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5
Q

mobile genetic elements target site selectivity

A
  • have only little target site selectivity therefore move freely throughout the genome
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6
Q

transposase acts on specific DNA sequence at the end of transposon

A
  • disconnects transposon from flanking DNA
  • inserts it into new target DNA site
  • no requirement for homology
  • most move only rarely
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7
Q

3 classes of transposons

A
  • DNA transposons
  • LTR-containing transposons
  • non-LTR retrotransposons (non autonomous retrotransposons)
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8
Q

wild type maize

A
  • C locus expressed
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9
Q

Mutated maize

A
  • transposable element ds is inserted into C locus and knocked out its expression
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10
Q

reverted maize

A
  • Ac acts upon Ds element to jump it out in some cells to restore color
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11
Q

which element is more active

A
  • Ac element more active than Ds element
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12
Q

Ac transposon

A
  • has full transposon
  • has transposase
  • inverted repeats
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13
Q

transposase acts on Ds

A
  • to move them but they can’t move themselves
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14
Q

original mutation

A
  • result of transposable element in C gene

- DS

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15
Q

another transposable element

A
  • Ac = activator

- induces Ds to transpose out of C, causing reversion

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16
Q

Ds can transpose, but

A

only with the help of Ac

17
Q

Ac autonomous transposon

A
  • can transpose itself and inactivate other Ds genes by itself
18
Q

DNA transposons move in the genome by

A
  • cut and paste mechanism
19
Q

two pathways of cut and paste transposons

A
  • replicative

- nonreplicative

20
Q

replicative

A
  • copy self and leave old copy in place

- 2 copies now

21
Q

nonreplicative

A
  • jumps from one place to another
22
Q

retrotransposons

A
  • move by copy and paste mechanism
23
Q

copy and paste

A
  • makes RNA intermediate that must be reverse transcribed into DNA before being inserted into the genome
24
Q

LTR-containing retrotransposons

A
  • similarities with retroviruses

- AIDS virus, HIV infects human cells

25
Q

how HIV replicates

A
  • take viral RNA and using host nucleotides converts viral RNA into ssDNA then transcribed into dsDNA
26
Q

non-LTR retrotransposons

A
  • movement requires reverse transcriptase

- move by a copy and paste mechanism

27
Q

types of non-LTR retrotransposons

A
  • LINEs

- SINEs

28
Q

80% of maize genome

A
  • retrotransposons
29
Q

half the genome of humans is composed of

A
  • repetitive DNA