Nucleotides: The Building Blocks of Nucleic Acids Flashcards

1
Q

primary structure

A
  • sequence of amino acids in a protein
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2
Q

secondary structure

A
  • first order folding
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3
Q

tertiary structure

A
  • second-order folding

- 3-D structure

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4
Q

quaternary structure

A
  • subunit interaction
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5
Q

Nucleoside

A

Base + Sugar

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6
Q

Nucleotide

A

Base + Sugar + Phosphate

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7
Q

Sugar

A
  • Ribose (RNA)

- Deoxyribose (DNA) - no OH in 2’ position

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8
Q

Purines

A
  • Adenine
  • Guanine
  • two membered rings
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9
Q

Pyrimidines

A
  • Cytosine
  • Thymine - only DNA
  • Uracil - only RNA
  • single ring
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10
Q

prime (‘)

A
  • prevent numbering confusion with the atoms in the bases.
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11
Q

bond between base and sugar

A
  • N-glycosidic bond (N-9)

- covalently bonded to N

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12
Q

P32

A
  • common radioactive label
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13
Q

Following the addition of nucleotides into DNA or RNA (nucleic acid)

A
  • put P32 on the 5’ alpha position on the free nucleotides
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14
Q

Following the transfer of a phosphate

A
  • put P32 on the 5’ gamma position on the ATP
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15
Q

Where are the phosphates?

A

May be carried in the 5’ or 3’ position

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16
Q

ester

A
  • linkage between an alcohol and an organic acid
17
Q

if the acid is phosphoric acid

A

the ester is phosphoester

18
Q

phosphoric acid can form more than one ester

A

phosphodiester

19
Q

Synthesis of a dinucleotide

A
  • formation of a phosphodiester bond between 3’ OH and 5’ phosphate
  • covalently linked
  • 5’-3’ synthesis in vivo
  • 3’ OH critical for nucleic acid synthesis
  • pyrophosphate released
20
Q

pyrophosphate

A
  • key for pyrosequencing
21
Q

chemical synthesis of DNA

A
  • done in 3’ to 5’ direction
  • primers for PCR and DNA sequencing
  • need to be single-stranded with no template involved.
  • synthesis controlled by identity of nucleotide provided by each round of synthesis.