Questions from S 7 Flashcards

1
Q

Actual exam question

Complete the virus childhood immunisation table

Age
8, 12, 16 weeks old

Name virus vaccines x 2
Name vaccine type x 2

A

HBV vaccine - recombinant subunit

Polio - inactivated

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2
Q

Actual exam question

Complete the virus childhood immunisation table

Age
8 and 12 weeks old

Name virus vaccine
Name vaccine type

A

Rotavirus

Live attenuated

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3
Q

Actual exam question

Complete the virus childhood immunisation table

Age
1 year old

Name virus vaccine
Name vaccine type

A

MMR

Live attenuated

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4
Q

Actual exam question

Complete the virus childhood immunisation table

Age
3 years 4 months old

Name virus vaccines
Name vaccine type

A

MMR vaccine booster - live attenuated

Polio vaccine booster - inactivated

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5
Q

When is live oral polio vaccine used?

A

Only used in developing countries, and in outbreak settings

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6
Q

Actual exam question

Complete the virus childhood immunisation table

Age
12/ 13 years old

Name virus vaccines x 1
Name vaccine type x 1

A

HPV

Gardasil subunit vaccine

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7
Q

Actual exam question

Complete the virus childhood immunisation table

Age
2 months - 17 years old

Name virus vaccines
Name vaccine type

A

Influenza A/B

Live intra-nasal vaccine for most children

Inactivated if live vaccine contra-indicated

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8
Q

Actual exam question

In addition to routine childhood immunisation schedule, further vaccines may be offered to at risk children (<18 years old) outside of routine schedule. Give 3 examples of such vaccines, and conditions under which they are offered

A

LAIV- all school age children

HAV - foreign travel to high risk country, or following exposure

HBV - birth, 1 month, 12 months, plus routine schedule doses. If born to mother who has HBV infection.
Full schedule Birth, 1 month, 2 months, 3 months, 4 months, 12 months

Rabies vaccine - travel to high risk area, or following exposure

Japanese Encephalitis - travel to high risk area

Yellow Fever - travel to high risk area

Tick Borne Encephalitis - travel to high risk area

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9
Q

Actual exam question

In 2022, there was an epidemic of severe hepatitis in young children (<10 years old) in UK.

What was the name of epidemic given by UKHSA?

What was the causative pathogen?

A

Original name - Acute hepatitis of unknown aetiology in children

After discovery -
Adeno-associated virus 2 infection in children with non-A–E hepatitis

Primary Adeno-associated virus 2 (AAV2) infection
Note this virus was discovered in adenovirus preparations, and thought to be a contaminant. But often found during adenovirus infections

NOT Adenovirus. This is in Adenoviridae family.
AAV2 is in Parvoviridae

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10
Q

Actual exam question

In 2022, there was an epidemic of severe hepatitis in young children (<10 years old) in UK.

What is the leading theory of how the pathogen caused disease?

Which laboratory proposed the leading theory?

A

Researchers in Glasgow across two teams found that AAV2 (which cannot replicate without a ‘helper’ virus such as an adenovirus or herpesvirus) was present in 96% cases of unknown hepatitis examined across both studies.

Therefore, the researchers believe that coinfection with two viruses – AAV2 and an adenovirus, or less often the herpes virus HHV6 (which has also been found in sample from some patients) – may offer the best explanation for the onset of severe liver disease in affected children.

AAV2 plus a helper virus - Adenovirus F41 or HHV6

Adenovirus F41 is a exam mark

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11
Q

Actual exam question

In 2022, there was an epidemic of severe hepatitis in young children (<10 years old) in UK.

How many children were affected?

What was the clinical picture of disease?

A

1000 cases in uk
50% hospitalised

Flu-like illness
Diarrhoea/ vomiting/ abdominal pain
acute hepatitis - ALT >1000
jaundice
1 patient required liver transplant

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12
Q

Actual exam question

In 2022, there was an epidemic of severe hepatitis in young children (<10 years old) in UK.

What were hypotheses about why this outbreak occurred?

A

Post-pandemic

Children had not been exposed to AAV2, Adeno, HHV6, so big population of children acquired these infections at same time

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13
Q

Actual exam question

In 2022, there was an epidemic of severe hepatitis in young children (<10 years old) in UK.

What was the role of SARS-CoV-2 in the clinical picutre

A

SARS-CoV-2 ruled out as a helper virus - not found in liver biopsies. Co-incidental that a lot of children had covid at similar time

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14
Q

Actual exam question

In 2022, there was an epidemic of severe hepatitis in young children (<10 years old) in UK.

How was the causative virus established?

A

Metagenomics from blood/ liver

With expertise in metagenomics and adenovirus sequencing, the London team studied 28 cases, including liver samples from five children that required a transplant and blood samples from the remaining children who did not – residual samples were sufficient to test 17 cases for AAV2, 16 of which tested positive. RNA sequencing of liver samples confirmed the presence of AAV2 replication in the liver of children with unknown hepatitis. Patient samples were compared with 132 controls from immunocompromised and immunocompetent patients. The London study showed that AAV2 was present only very rarely in the children who did not have hepatitis (6 out of 100) and at much lower levels, even for immunocompromised children (11 out of 32)

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15
Q

Actual exam question

In 2022, there was an epidemic of severe hepatitis in young children (<10 years old) in UK.

Why does western population seem more at risk of this infection?

A

HLA-DRB1*04:01 allele

A recent study identified a possible immunogenetic association on the basis of high frequency of the class II HLA-DRB1*04:01 allele associated with the UK hepatitis cases

This allele is more frequently detected in populations in northwestern Europe suggesting that children in Ireland could be particularly vulnerable to UK hepatitis cases

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16
Q

Actual exam question

Your departmental clinical scientist has used unbiased sequencing on a brain biopsy sample form a febrile returning traveller with encephalitis.

They inform you that they have identified a new Orthobunyavirus - whole genome sequence read with good read depth

What does good read depth mean?

A

Sequencing depth, also known as read depth or depth of coverage, refers to the number of times a specific base (nucleotide) in the DNA is read during the sequencing process. In other words, it’s the average number of times a given position in the genome is sequenced

A 30x human genome means that the reads align to any given region of the reference about 30 times, on average. In practical terms, the higher the sequencing depth, the more times the genome is read, resulting in a more accurate and reliable information

a very rough generalization an average read depth of about 20 is considered minimum for human genome

Sequencing coverage is important in genomics because more coverage gives researchers greater statistical confidence that their results, and the conclusions that are drawn from them, are correct

17
Q

Actual exam question

Your departmental clinical scientist has used unbiased sequencing on a brain biopsy sample form a febrile returning traveller with encephalitis.

They inform you that they have identified a new Orthobunyavirus - whole genome sequence read with good read depth

List 6 additional tests which you would use to interrogate this finding

A

NGS - has higher sentivity, and so better for new viruses, than standard Sanger sequencing

Repeat testing on different samples - blood/ CSF/ faeces

Histopathology staining

PCR testing - design primers/ probes for this

Electron microscopy

Cell culture - inoculate virus into live cells

Animal tests - inoculate virus into live animals eg primates

Contact the local lab from region they have travelled from. See f they have any further information

18
Q

Actual exam question

Your departmental clinical scientist has used unbiased sequencing on a brain biopsy sample form a febrile returning traveller with encephalitis.

They inform you that they have identified a new Orthobunyavirus - whole genome sequence read with good read depth

what is an example of an Orthobunyavirus

A

La Crosse virus

North America

Mosquito spread