Micro 1 Flashcards
peptidoglycan structure
sugar backbone with peptide side chains cross linked with transpeptidase
lipoteichoic acid in what organisms and activity
Gram positives, induces TNG and IL-1
Lipopolysaccharide in what and does what
Endotoxin of gram negatives. Induces TNF and IL-1. O polysaccharide is the antigen.
Space between cytoplasmic membrane and outer membrane in gram negatives
Periplasm: contains hydrolytic enzymes including Beta-lactamases
what is a capsule made of
polysccharide
exception to polysaccharide capsule
Bacillus anthracis, contains D-glutamate
sex pilus for what process
conjugation
pilus and fimbria made of
glycoprotein
spore made of
keratin-like coat; dipicolinic acid; peptidoglycan
dipicolinic acid??
????
glycocalyx structure and function
polysaccharide, adheres to surfaces (biofilms)
capsules in what organisms
both gram positives and negatives
Name the gram + cocci
staph and strep
gram - cocci
neisseria (gram - diplococci)
What are the branching filamentous bacteria
actinomyces and nocardia (weakly acid fast) Gram positives!!!
What are the pleomorphic bacteria
Rickettsiae (Giemsa) and Chlamydiae (Giemsa) Gram negatives!!!!
What are the spiral bacteria
Spirochetes (gram negatives): Borrelia (Giemsa), Leptospira, Treponema
No cell wall bacteria
Mycoplasma (does not Gram stain)
Mycoplasma cell membrane
Contain sterols and have no cell wall
Mycobacteria cell wall
Contains mycolic acid with high lipid content.
Name the gram positive rods
Clostridium, corynebacterium, bacillus, listeria, mycobacterium (acid fast), gardnerella (gram variable)
The gram-negative rods
There are a ton.
Make a table of the different kinds of bacteria, at least be able to recognize what each one is.
…………………….If you know all the gram-positives (there are only a few), you can know what all the gram negatives are!!!!!
Everything is gram negative except for
Staph, strep, clostridium, corynebacterium, bacillus, listeria, gardnerella, actinomyces, nocardia, (not sure about nocardia)
Is mycoplasma gram +?
??????????????
What is in acid fast stain
Carbolfuchsin to stain the high lipid content of mycobacteria
Legionella is found where
Priarmily intracellular
Legionella staining
silver stain
Rickettsia gram stain?
Intracellular parasite (doesn’t gram stain)
Chlamydia stain?
IC parasite; lacks muramic acid in cell wall
Muramic acid?
???
What is Giemsa stain?
?????
What bugs stain with Giemsa???
Chlamydia, Borrelia, Rickettsia, Trypanosomes, Plasmodium (these sound intracellular, but are all of them?….nope..fuck)
What is PAS stain
Periodic acid-Schiff: stains glycogen!!!!, mucopolysaccharides. PASs the sugar.
PAS stain for what
Tropheryma whipplei (Whipple disease)
Ziehl-Neelsen stain
Carbolfuchsin (Acid fast: nocardia, mycobacterium)
India ink stain
Cryptococcus
Other way of staining cryptococcus
Mucicarmine to stain thick polysaccharide capsule red
Silver stain for what
Fungi (pneumocystis), legionella, helicobacter
Special culture requirements….Know them???
?????????
Growing neisseria gonorrheae or meningitidis
Thayer-Martin or VPN media (Vancomycin, Polymyxin, and Nystatin.
Growing Bordetella pertussis
Bordert-Gengou (potato) agar (Bordet for Bordertella)
Growing E. coli
Eosin-Methylene blue (EMB) agar as colonies with green metallic sheen
Growing Fungi
Sabouraud agar. “Sab’s a fun guy!”
What are the obligate aerobes
Pseudomonas, Mycobacterium tuberculosis, and Nocardia! All lung infections
What part of lung has the highest PO2
Apices of lung, where M. tuberculosis goes after reactivation from immune compromise or TNF-alpha inhibitor.
Bacteria in burn wounds
P. aeruginosa
Where do you see P. aeruginosa
Burn wounds, complications of diabetes, nosocomial PNA, and pneumonias in cystic fibrosis patients.
What are the obligate anaerobes
Clostrium, bacteroides, and actinomyces (actinomyces and nocardia are at opposite ends)
What do obligate anaerobes lack
Catalase and/or superoxide dismutase
Characteristics of obligate anaerobes
Smell bad (short-chain fatty acids), difficult to culture, and produce gas in tissue (CO2 and H2).
What ABx can’t be used against anaerobes
Aminoglycosides because they require O2 to enter.
Obligate intracellular bugs
Rickettsia, Chlamydia (can’t make own ATP)
Facultative intracellular bugs
Salmonella, neisseria, brucella, mycobacterium, listeria, francisella, legionella, yersinia pestis
Mnemonic for facultative intracellular bugs
Some Nasty Bugs May Live FacultativeLY
Encapsulated Bacteria
SHiNE SKiS: Strep pneumo, HiB, N. meningitidis, E. coli, Salmonella, Kleb, group B Strep
How to kill encapsulated bacteria
Opsonized and cleared by spleen
What vaccines to give aplenics
S. pneumo, H. flu, and N. meningitidis
Catalase-positive organisms
Pseudomonas, Listeria, Aspergillus, Candida, E.coli, S. aureus, Serratia (You need PLACESS for your CATs)
What kind of vaccine activates T-cells
Conjugated vaccine (to protein), polysaccharide antigen cannot be presented to T cells.
Pneumovax kind of vaccine
Pneumococcal Polysaccharide Vaccine (PPSV) with no conujugated protein
Prevnar is what kind of vaccine
Pneumococcal Conjugate Vaccine (PCV)
HiB vaccine
Conjugate
Meningococcal vaccine
Conjugate vaccine
Urease-positive bugs
Cryptococcus, H. pylori, Proteus, Ureaplasma, Nocardia, Klebsiella, S. epidermidis, S. saprophyticus
Pigment-producing bacteria
Actinomyces israelii (Yellow), S. aureus (Yellow), Pseudomonas aeruginosa (blue-green), Serratia marcescens (red)
What does Protein A do?
Binds Fc region of IgG. Prevents opsonization and phagocytosis. Expressed by S. aureus.
What does IgA protease do?
Cleaves IgA. Secreted by S. pneumo, HiB, and Neisseria (SHiN)
What does M protein do?
Helps prevent phagocytosis. Expressed by group A strep.
Compare exotoxin and endotoxin..
………….
Basics of endotoxin
Outer cell membrane of most gram-negative bacteria, is not secreted, is made out of LPS (released when lysed), made by bacterial chromosome, low toxicity, creates fever, chock (hypotension), and DIC, induces TNF,IL-1, and IL-6, poorly antigenic, no toxoids formed and no vaccine avaialble, stable at 100 degrees celsius for 1 hr. Found in meningococcemia, sepsis by gram negative rods
What is a toxoid?
Toxoid is the toxin that has been inactivated chemically or with heat but still has its immunogenicity and is used as vaccine.
Basics of exotoxin
Certain species of gram + and gram - bacteria, secreted from cell, polypetide, from plasmid or bacteriophage, high toxicity, induces hihg-titer antibodies called antitoxins, toxoids used as vaccines, destroyed rapidly at 06 degrees celsius (except staph enterotoxin), causes tetanus, botulism, and diphtheria.
Write out a table of bugs with exotins
……..
Dysentery from what bacteria
Shigella
ETEC toxins mnemonic
Labile int he Air, Stable on the Ground (cAMP and cGMP)
ENDOTOXIN mnemonic
Edema, nitrix oxide, DIC/Death, Outer membrane, TNF-alpha, O-antigen, eXtremely heat stable, IL-1, Neutrophil chemotaxis
What are endotoxins
A LPS in outer membrane of gram negatives
What does Lipid A do
It is an endotoxin, activates macrophages, complement, and tissue factor.
What activated macrophages do
IL-1, TNF, and NO
What activated complement does
C3a and C5a
What activated tissue factor does
Coagulation cascade and subsequent DIC
What is competence
The ability to take up naked DNA from environment for Transformation
What bacteria are known for transformation
SHiN: S. pneumo, HiB, and Neisseria
What is optochin
Optochin is used to distinuish alpha-hemolytic strep. Strep pneumo is optochin sensitive but strep viridans is resistant.
Example of Viridans strep
S. mutans
F+ conjugation
From a F+ plasmid which contains genes for sex pilus and conjugation. no chromosomal genes. The entire plasmid is shuttled through sex pilus.
Hfr conjugation
Incorporated into bacterial chromosome. Transfers plasmid and chromosome genes.
Transposition in bacteria
Transposons between plasmid and chromosome. Abx resistance genes on R plasmid.
Generalized transduction
Lytic phage gets DNA incorporated into the virion.
Specialized transduction
Lysogenic phage gets flanking DNA from bacteria
5 bacterial toxins encoded in a lysogenic phage
ABCDE: ShigA-like toxin, Botulinum, Cholera, Diphtheria, Erythrogenic of Strep pyogenes.