Metabolism Review Flashcards
What cellular processes happen in both mitochondria and cytoplasm
Urea cycle, heme synthesis, gluconeogenesis
What processes happen in only mitochondria
Beta oxidation of fatty acids, acetyl coa production, krebs cycle, oxidative phosphorylation.
Carboxylase enzyme cofactor
Add CO2 to things – require biotin
Rate determining enzyme of glycolysis
PFK-1, activated by F26bp, amp, inhibited by atp, citrate
Rate determining enzyme of gluconeogenesis
F16bisphosphatase, activated by ATP and acetyl coa. Inhibited by AMP and fructose 2,6 bisphosphate
Rate determining enzyme of TCA
Isocitrate dehydrogenase, activated by ADP
Rate determining enzyme of glycogenesis
Glycogen synthase
Rate determining enzyme of glycogenolysis
Glyogen phosphorylase
Rate determining enzyme of HMP shunt
Glucose 6 phosphate dehydrogenase
Rate determinign enzyme of de novo purine synthesis
PRPP amidotransferase
Urea cycle rate limiting enzyme
Carbamoyl phosphate synthetase
Fatty acid synthesis rate determining enzyme
Acetyl coa carbodylase
Fatty acid oxidation rate determining enzyme
Carnitine acyltranferase
Fatty acid oxidation rate determining enzyme
Carnitine acyltranferase
How much atp does aerobic metabolism of glucose produce?
32 via malate-aspartate shuttle (heart and liver), 30 via G3P shuttle (muscle
How much atp does anaerobic glycolysis produce
Costs 2, makes 4, net 2.
How does arsenic affect metabolism
Arsenic causes glycolysis to net zero ATP and also inhibits lipoic acid
What do each of these active carriers produce? ATP NADH CoA, lipoamide Biotin THF SAM TPP
Phosphate electrons acyl group (b7) CO2 1 carbon units CH3 groups Aldehydes (b1)
NAD vs NADPH
NAD (from b3) ususally used in catabolic processes to carry away electrons as NADH
NADPH is usually used in anabolic processes (steroid and fatty acid synthesis), the respiratory burst, cyp450, and glutathione reductase
Hexokinase vs glucokinase
Hexokinase has low Km (high affinity) and low total velocity. In muscle so it can use glucose as it exists in the body. Not induced by insulin, inhibited by G6P.
Glucokinase has high Km (low affinity) and high velocity. Only in liver. Induced by insulin after a meal to store glucose in cells for use as glycogen. Not inhibited by g6P.
MODY
Maturity onset diabetes of the young – defect in glucokinase so not enough glucose taken into liver. Hyperglycemia.
MODY
Maturity onset diabetes of the young – defect in glucokinase so not enough glucose taken into liver. Hyperglycemia.
Draw glycolysis out
Pay special attention to the steps that require ATP (G, G3P; F6P, F16BP)
and make atp (13BPG, 3PG; PEP,pyr)
Cofactors required in pyruvate dehydrogenase complex
TPP (B1) FAD (B2) NAD (B3) CoA (B5) Lipoic Acid (inhibted by arsenic, causes vomiting, rice water stools, garlic breath).
Where is pyruvate dehydrogenase located?
How is pyruvate dehydrogenase activated? What is the product made?
Located in the mitochondrial membrane
By a exercise which causes high NAD/NADH ratio, increased ADP, increased Ca.
Acetyl CoA.
Pyruvate dehydrogenase deficiency findings and treatment
Causes lactic acidosis (via LDH) and build up of alanine (via ALT).
Neurologic symptoms too.
Treat by supplementing ketogenic amino acids (lysine and leucine) or ketogenic foods (high fat)
Pyruvate dehydrogenase deficiency findings and treatment
Causes lactic acidosis (via LDH) and build up of alanine (via ALT).
Neurologic symptoms too.
Treat by supplementing ketogenic amino acids (lysine and leucine) or ketogenic foods (high fat), which bypass PDH complex and go directly into TCA
Products of pyruvate metabolism
Lactate via LDH (anaerobic metabolism in retina, lens, RBC, renal medulla)–requires B3
Alanine via ALT (used to take amino groups from muscle to liver)– requires B6
OAA via Pyruvate carboxylase (to be used in gluconeogenesis) – requires biotin
Acetyl-CoA via Pyruvate dehydrogenase
TCA Products
3 NADH, 1 FADH2, 2 CO2, 1GTP per acetyl coa, 2x for 1 glucose.
Electron transport chain.
Electrons enter intermembrane space through complexes 1-4 from the inner mitochondrial membrane. Complex 1 is where NADH goes, complex 2 (succinate dehydrogenase) is where FADH goes. Complex 4 passes electrons to O2 to make H2O. Generates H gradient in intermembrane space which pass through ATP synthase and make ATP.
Electron transport chain.
Electrons enter intermembrane space through complexes 1-4 from the inner mitochondrial membrane. Complex 1 is where NADH goes, complex 2 (succinate dehydrogenase) is where FADH goes. Complex 4 passes electrons to O2 to make H2O. Generates H gradient in intermembrane space which pass through ATP synthase and make ATP.
ETC complex inhibitors
Rotenone inhibits complex 1
Antimycin inhibits complex 3
Cyanide/CO inhibit complex 4
Oligomycin inhibits ATPsynthase
Uncoupling agents
Aspirin overdose
Thermogenin
2,4 Dinitrophenol
increase O2 consumption because they decrease proton gradient, but No ATP generated. Energy dissipated as heat
Gluconeogenesis key enzymes
Pyruvate carboxylase (in mitochondria), requires biotin
PEPcarboxykinase in cytosol (requires GTP)
Fructose 1,6 BPase
Glucose 6 Phosphatase (not found in muscle)
Why can’t gluconeogenesis happen in muscle?
Muscle lacks glucose 6 phosphatase.
How do even chain fatty acids contribute to gluconeogenesis
They don’t. They can only yield acetyl coa equivalents.
How do odd chain fatty acids contribute to gluconeogenesis
When broken down, yield proprionyl coa, which can enter TCA as succinyl CoA, regenerate OAA.
How much ATP does 1 NADH produce?
FADH?
- 5
1. 5
HMP Shunt
Provides a source of NADPH when glucose is abundant to serve in fatty acid and steroid synthesis, glutathione reduction in RBC. Also used to generate ribose for nucleotide synthesis.
HMP Shunt
Provides a source of NADPH when glucose is abundant to serve in fatty acid and steroid synthesis, glutathione reduction in RBC. Also used to generate ribose for nucleotide synthesis.
Oxidative phase of HMP shunt
Irreversible phase, G6P turned into Ribulose 5 P, generating 2 NADPH, via Glucose 6 Phosphate Dehydrogenase.
Nonoxidative phase of HMP shunt
Revesible phase, ribulose 5 phosphate turned into ribose 5 phosphate by phosphopentose isomerase. G3P and F6P generated for glycolysis by transketolases.
Nonoxidative phase of HMP shunt
Revesible phase, ribulose 5 phosphate turned into ribose 5 phosphate by phosphopentose isomerase. G3P and F6P generated for glycolysis by transketolases.
Components of respiratory burst
O2 turned into O2- by NADPH oxidase, O2-turned into H2O2 by SOD, H2O2 turned into HOCl by MPO.
How is H2O2 neutralized?
By Glutathione peroxidase.
G6PD deficiency
The most common enzyme deficiency. X-linked recessive disorder. Causes Hb to be oxidized and build up in cells as heinz bodies. Bite cells from spleen especially after sulfa drugs, malaria drugs, fava beans. Hemolytic anemia.
Fructokinase deficiency
Causes fructose to build up in blood and urine (can’t be P’d to F1P and stay in cells). Totally benign.
Aldolase B deficiency
More serious (though less serious than galactose metabolism problems). F1P accumulates in cells, decrease in available phosphate, which blocks glycogenolysis and gluconeogenesis.
Hypoglycemia, jaundice, cirrhosis, vomiting, especially after fruit juices and honey.
URINE DIPSTICK NEGATIVE (only tests for glucose).
Treat by decreasing fructose and sucrose.
Essential Fructosuria
Fructokinase deficiency Causes fructose to build up in blood and urine (can’t be P’d to F1P and stay in cells). Totally benign.
Fructose intolerance
Aldolase B deficiency. More serious (though less serious than galactose metabolism problems). F1P accumulates in cells, decrease in available phosphate, which blocks glycogenolysis and gluconeogenesis.
Hypoglycemia, jaundice, cirrhosis, vomiting, especially after fruit juices and honey.
URINE DIPSTICK NEGATIVE (only tests for glucose).
Treat by decreasing fructose and sucrose.
Galactokinase deficiency
Galactose cant be turned into Galactose 1 P, so galACTitol builds up. Relatively mild.
Symptoms are: lack of a social smile, galactose in blood/urine, infantile catarACTs.
Classic galactosemia
Absence of galactose 1 phosphate uridyltransferase. Damage is caused by accumulation of galactitol.
Causes failure to thrive, jaundice, hepatomegaly, infantile catarACTs.
Treat by exclusing galactose and lactose from diet.
Classic galactosemia
Absence of galactose 1 phosphate uridyltransferase. Damage is caused by accumulation of galactitol.
Causes failure to thrive, jaundice, hepatomegaly, infantile catarACTs.
Treat by exclusing galactose and lactose from diet.
How to create sorbitol?
What is it used for?
Any problems with sorbitol
From glucose using aldose reductase. Its an alternative method of trapping glucose in cells if it is high. Many tissues have sorbitol dehydrogenase to convert it to fructose, however, schwann cells, lens, and retina don’t have it. Causes osmotic damage. This is what happens in diabetes.
How to create sorbitol?
What is it used for?
Any problems with sorbitol
From glucose using aldose reductase. Its an alternative method of trapping glucose in cells if it is high. Many tissues have sorbitol dehydrogenase to convert it to fructose, however, schwann cells, lens, and retina don’t have it. Causes osmotic damage. This is what happens in diabetes.
Glucogenic Essential Amino Acids
Valine, Histidine, Methionine