Lecture 8 Flashcards

You may prefer our related Brainscape-certified flashcards:
1
Q

Constitutive gene expression

A

is always expressed

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

Inducible gene expression

A

can be turned on/off

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

Metabolic regulation

A

controlling types, amount, and activity of cellular proteins
goal: efficient use of available resources
- allows you to compete in the environment

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

Gene regulation

A

increase/decrease amount of protein
- slower response

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

Post-translation regulation

A

increase/decrease activity of protein
- faster response
example: protein degradation

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

Reporter genes

A

code for proteins that are easy to detect and measure
example: green fluorescent protein (GFP)
- 1 way of studying gene expression

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

DNA sequencing

A

isolate mRNA from cells, transform mRNA to DNA, and determine identity & number DNA sequences
- 1 way of studying gene expression

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

Regulatory proteins

A

proteins that bind to DNA
Homodimeric structure (two identical structures)
Bind in major groove of DNA
Interact with specific DNA sequences

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

Regulatory proteins function

A

start/stop transcription
negative control: block RNA polymerase, prevent transcription
positive control: bind RNA polymerase, activate transcription

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

Negative control

A

repression of mRNA synthesis
- control DNA region = operator
- located after promoter

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

Positive control

A

activation of mRNA synthesis
- control DNA region = activator-binding site
- located before promoter

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

Enzyme repression (negative control)

A

repressor (DNA binding protein) + corepressor (binds/activates repressor)
biosynthetic (anabolic) enzymes

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

Enzyme induction

A

repressor + inducer
degradative (catabolic) enzymes
ex. lac operon

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

maltose catabolism

A

maltose breakdown
- mal operon
- maltose activator protein once bound to inducer pushes RNA polymerase

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

Signal molecules compromise of

A

internal and external signals

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

Internal signals

A

small molecules
enter the cell, directly affect transcription

17
Q

External signals

A

large molecules
do not enter the cell, require signal transduction

18
Q

Quorum sensing

A
  • internal signal molecules
  • autoinducers
  • population density
19
Q

autoinducers

A
  • signal molecules (species-specific)
  • diffuse freely across cytoplasmic membrane (concentration outside cell = concentration inside cell)
  • activate transcription of genes
  • produced by bacteria
  • can leave cell into environment
20
Q

Two-component regulatory system

A

Sensor kinase protein
- Located in cytoplasmic membrane
Response regulatory protein
- located in the cell (cytoplasm)

21
Q

Sensor kinase

A
  • detects signal
  • autophosphorylates
  • transfer phosphates
22
Q

Response regulator

A
  • accepts phosphate
  • binds to DNA
  • represses transcription
23
Q

Porin regulation

A

environmental signal: osmotic pressure
sensor kinase: EnvZ
response regulator: OmpR
activator/repressor
genes regulated through ompF (wide) and ompC (skinny)

24
Q

Attenuation

A
  • transcription
    secondary structures:
  • form 1– regions 3 + 4 bind
    – stem-loop ahead of RNA polymerase
    – transcription blocked
  • form 2– regions 2 + 3 bind
    – stem-loop behind RNA polymerase
    – transcription proceeds
25
Q

Tryptophan synthesis

A

form 1– fast translation
- high amount of Trp
- transcription blocked (trp genes)
form 2– slow translation
- low amount Trp
- transcription proceeds (trp genes)

26
Q

Riboswitches

A

prevention of translation
signal metabolite binds directly to mRNA
based on alternative secondary structures of mRNA
secondary structures:
-form 1– regions 1+2 bind
(Shine-Dalgarno unbound & translation proceeds)
-form 2– regions 2+3 bind
(Shine-Dalgarno bound & translation blocked)

27
Q

Antisense RNA

A

prevention of translation
- small RNA (sRNA) binds to synthesized mRNA
- double-stranded mRNA = no translation