High Yield Topics-Biochemistry Flashcards
On NBME, do you ever refer or send patient to ethics committee?
NO! NEVER!
Use patient-centered questions, respect patient autonomy, never lie
Inheritance pattern of mostly enzyme deficiencies; usually seen in only 1 generation
AR
Inheritance pattern of mostly structural protein gene defect; usually seen in many generations with variable expressivity
AD
How to distinguish x-linked dominant vs. recessive
x-linked dominant: females are more affected
x-linked recessive: males are more affected
- no male to male transition in both types!
One gene contributes to multiple phenotypic effects; example is PKU ( light skin, intellectual disability, and musty body odor)
Pleiotropy
Presence of both normal and mutated mtDNA, resulting in variable expression in mitochondrially inherited disease
- mtDNA passed from mother to all children.
Heteroplasmy
inheritance that occurs when one characteristic is controlled by two or more genes
Polygenic inheritance
When gene is “silenced”
imprinting
A disorder caused by paternal uniparental disomy with paternal imprinting and maternal deletion; Inappropriate laughter, seizures, ataxia, severe intellectual disability
Angelman syndrome
- STUDY AID: angelMEN syndrome is paternal uniparental disomy
A disorder caused by maternal uniparental disomy with maternal imprinting and paternal deletion; Hyperphagia and obesity, intellectual disability, hypogonadism, hypotonia
Prader-Willi syndrome
immotile cilia (cilliary dyskinesia) due to a dynein arm defect; decreased male and female fertility due to immotile sperm and dysfunctional fallopian tube cilia; cause bronchiectasis, recurrent sinusitis, chronic ear infections, conductive hearing loss, and situs inversus (dextrocardia on xray)
Kartagener syndrome
- Kartagener’s restaurant: take-out only –> there’s no dynein “dine-in”
Inheritance pattern of Kartagener syndrome
AR
Normal function of CFTR gene
CFTR gene encodes ATP-gated Cl- channels –> secrete Cl- in lungs & GI tract and reabsorb Cl- in sweat glands
Inheritance pattern of CF
AR
Describe pathophysiology of CF
- Phe508 deletion in CFTR gene on chromosome 7
- Misfolded protein –> protein reatined in RER and cannot be transported to cell membrane
- Cl- cannot be secreted –> Increased intracellular Cl-
- Compensatory Na+ reabsorption via ENaC channel (and H2O follows)
- Abnormal thick mucus secreted in lungs and GI tract
- Na+ and Cl- cannot be reabsorbed in sweat glands –> excessive NaCl salt (and water) losses
How is CF diagnosed?
Adults: Increased Cl− concentration in pilocarpine-induced sweat test
Newborn Screening: increased immunoreactive trypsinogen
- pilocarpine is cholinergic agonist (increase sweating)
What electrolyte abnormality can be present in CF patients due to renal K+/H+ wasting in order to compensate ECF Na+/H2O losses (through sweating)?
HINT: effects are similar to taking a loop diuretic
contraction (metabolic) alkalosis & hypokalemia
- K+/H+ ATPase moves K+ and H+ in opposite directions –> H+ moves into the cell & K+ moves out of the cell –> Hypokalemia & metabolic alkalosis
Pulmonary complications associated with CF
Recurrent pulmonary infections, chronic bronchitis, and bronchiectasis
GI-related complications associated with CF
Pancreatic insufficiency, malabsorption with steatorrhea, fat-soluble vitamin deficiencies, and meconium ileus
a bowel obstruction that occurs in CF babies when the meconium in your child’s intestine is even thicker and stickier than normal meconium
meconium ileus
What other clinical signs/symptoms are associated with CF
infertility in men (subfertility in women), clubbing of nails, and nasal polyps
Tx for pancreatic insufficiency due to CF
Pancreatic enzyme replacement therapy
Tx for phe508 deletion in CF (2 types)
- lumacaftor (corrects misfolded proteins and improves their transport to cell surface)
- ivacaftor (increase opening of Cl– channels → improved chloride transport)
Both b-oxidation (FA oxidation) and ketogenesis occur in what organelle?
mitochondria
Glycolysis occurs in what part of the cell?
cytoplasm/cytosol
Heme synthesis, urea cycle, and gluconeogenesis occur in what organelle?
both cytoplasm and mitochondria
Enzyme that muscle lacks and therefore cannot participate in gluconeogenesis
glucose-6-phosphatase
Even/Odd chain FA can undergo gluconeogenesis (enter the TCA cycle as 1 propionyl-CoA) and serve as a glucose source
Odd chain FA
glucose-6-phosphatase resides in what organelle to convert Glucose-6-phosphate to glucose?
ER
Pentose phosphate pathway is aka
HMP shunt
HMP shunt provides what two important products from glucose-6-phosphate
- NADPH (required for many reductive rxns)
2. ribose-5-phosphate (nucleotide synthesis)
What enzyme converts glucose-6P to 6-phosphogluconate (and reduces NADP+ to NADPH)?
Glucose-6-phosphate dehydrogenase (G6PD)
- G6PD deficiency leads to anemia (heinz bodies & bite cells)
Tyrosine, DOPA, dopamine, NE, and epinephrine are what amino acid derivates?
Phenylalanine
Niacin (B3) and serotonin are what amino acid derivates?
Tryptophan
Histamine is what amino acid derivates?
Histidine
Porphyrin and heme are what amino acid derivates?
Glycine
GABA and glutathione are what amino acid derivates?
Glutamate
glutamate is not same as glutamine; two different AAs
creatinine, urea, and nitric oxide are what amino acid derivates?
Arginine
- STUDY AID: creatinine sounds like creatine
- You need “creatinine” to build muscle (arghhh)
Nonpolar or hydrophobic amino acids
GLAM VIP PT
Glycine
Leucine
Alanine
Methionine
Valine
Isoleucine
Phenylalanine
Proline
Tryptophan
What are the steps, enzymes, and cofactors in catecholamine synthesis?
- phenylalanine to tyrosine
- by phenylalanine hydroxylase
- BH4 - tyrosine to DOPA
- by tyrosine hydroxylase
- BH4 - DOPA to dopamine
- by DOPA decarboxylase
- B6 - dopamine to NE
- by dopamine B-hydroxylase
- Vitamin C - NE to Epinepherine
- by PMNT
- S-Adenosyl methionine (SAM)
What enzyme converts tyrosine to melanin?
Tyrosinase
Enzyme affected in PKU
phenylalanine hydroxylase
Enzyme affected in albinism
Tyrosinase
Congenital deficiency of homogentisate oxidase in the degradative pathway of tyrosine to fumarate; causes pigment-forming homogentisic acid builds up in tissue; presents with dark urine (when exposed to air), ochronosis (bluish-black connective tissue like in ear cartilage and sclerae), and arthralgias (homogentisic acid builds up in joints)
alkaptonuria
A disorder due to decreased phenylalanine hydroxylase or decreased tetrahydrobiopterin (BH4) cofactor; presents with intellectual disability, growth retardation, seizures, fair complexion, eczema, musty body odor
Phenylketonuria (PKU)
A disorder affecting infants due to lack of proper dietary therapy during pregnancy; presents with microcephaly, intellectual disability, growth retardation, congenital heart defects
Maternal PKU
*Mother has PKU which affects infant growth during pregnancy
PKU patients must avoid what artificial sweetener since it contains phenylalanine
aspartame
Enzyme affected in alkaptonuria
homogentisate oxidase
- converts Homogentisic Acid to Maleylacetoacetic Acid
Enzyme that destroys damaged or ubiquitin-tagged proteins; defective in “Parkinson disease”
Proteasome
*Defects in the ubiquitin-proteasome system have been implicated in some cases of Parkinson disease
An organelle that plays a key role in apoptosis; Cytochrome C leaks into the cell from this organelle and activates caspases, which break down cellular proteins
Mitochondria
Stabilize the inter mitochondria membrane, which prevents leakage of Cytochrome C into the cell
Bcl-2 and Bcl-xL
What cells lack Mitochondria?
RBCs (it needs to carry O2 and not used by mitochondria)
What autoimmune disorder is associated with anti-mitochondrial antibodies?
Primary Biliary Cholangitis (bile ducts in liver)
Most common type of collagen; makes bone, skin, tendon, cornea, LATE wound repair
Type I: bONE
Type of collagen that makes cartilage, hyaline, vitreous humor, and nucleus pulposus
Type II: carTWOlage
Type of collagen that makes blood vessels, uterus, early wound repair, and “reticulin” in connective tissue
Type III
- STUDY AID: parallel lines look like blood vessels
Collagen type deficient in Ehlers-Danlos syndrome
Type III or V
Type of collagen that makes lens and basement membrane (lamina)
Type IV: four for floor (BM)
Collagen type deficient in Alport syndrome
Type IV
Collagen type targeted by antibodies in Goodpasture syndrome
Type IV
- STUDY AID: “Good Pastor is ANTI-satan”
Collagen is synthesized by
fibroblasts
Describe steps of collagen synthesis
- Preprocollagen Synthesis:
- collagen a-chains (Glycine-Proline-Lysine) are translated in RER - Hydroxylation:
- Proline and lysine are hydroxylated
- Vitamin C is required! - Glycosylation:
- Hydroxylysine residues are glycosylated
- Three glycosylated collagen a-chains are bonded via hydrogen and disulfide bonds
- Procollagen forms (triple helix of 3 a-chains) - Exocytosis:
- procollagen is exocytosed into extracellular space (outside of cell) - Proteolytic Processing:
- C and N terminals of procollagen are cleaved
- Tropocollagen forms - Cross-linking:
- lysyl oxidase covalently link many tropocollagens via lysine-hydroxylysine bonds
- Copper is required!
- Collagen fibers form
Vitamin C deficiency can impair what collagen synthesis step and cause what disease?
hydroxylation of proline and lysine; Scurvy
Problems forming triple helix can cause what disease?
Osteogenesis imperfecta
Problems with cross-linking is caused by what disease?
Menkes disease
↓ production of otherwise normal type 1 collagen due to problems forming triple helix; presents with multiple fractures after minimal trauma, blue sclerae, tooth abnormality, and hearing loss
Osteogenesis imperfecta
Inheritance pattern of Osteogenesis imperfecta
AD
- structural protein defect
Tx for Osteogenesis imperfecta
bisphosphonates to ↓ fracture risk
Gene defects of Osteogenesis imperfecta
COL1A1 and COL1A2
Connective tissue disease caused by impaired copper absorption and transport due to defective Menkes protein; presents with brittle, “kinky” hair, growth retardation, hypotonia, and ↑ risk of cerebral aneurysms
Menkes disease
What enzyme activity is low due to impaired copper absorption in Menkes disease?
lysyl oxidase
*copper is a necessary cofactor
Gene defects of Menkes disease
ATP7A
- ATP7B in Wilson disease (causes high level of copper instead of low as in Menkes disease)
- STUDY AID: a (means to lack)
Inheritance pattern of Menkes disease
X-Linked recessive