General Ecology Finals Part 2 Flashcards

1
Q

When was DNA first noticed and who noticed it?

A

in 1869; Friedrich Miescher

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

How was DNA first discovered and what was it called?

A

Friedrich Miescher isolated it from nuclei of white blood cells; He called it “nuclein”

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

In 1895, Edmund Wilson first suggested that DNA might be [..]. He observed that [..] and [..] contribute the same number of [….] during reproduction.

A

hereditary material; sperm and eggs; chromosomes

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

DNA is a polynucleotide consisting of what four repeating subunits and held together by what bonds?

A

adenine (A), thymine (T), cytosine (C), and guanine (G), held together by covalent bonds

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

In 1923, DNA was localized to […] and made a candidate for the […]. However both […] and […] are found in […].

A

chromosomes; the hereditary material; proteins and RNA; chromosomes

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

What other candidates are there for the hereditary material besides DNA?

A

Lipids and carbohydrates

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

Frederick Griffith identified two strains of Pneumococcus: S, which caused […] in mice, and R which […]. A single gene mutation change can convert an […] strain to an […] strain of the same antigenic type.

A

fatal pneumonia; did not;
S (smooth); R (rough)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

Griffith proposed the transformation factor as the molecule that transformed the […] into […]. He said the transforming factor carried […] but he could not identify the […]

A

R I I ; S I I I; hereditary information; molecule

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

Avery, MacLeod, and McCarty used […] and [..] to infect mice. The […] of heat-killed S I I I bacteria was divided into […] and treated to destroy either [..], [..], [..], or [..] and [..] before mixing with live RII bacteria.

A

heat-killed S I I I bacteria; live R I I bacteria; extract; aliquots; DNA, RNA, proteins, or lipids and polysaccharides

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

[..] in 1952, showed that D N A is responsible for bacteriophage infection of bacteria cells. What are bacteriophages? Phages such as T2 have a […] that attaches to the host cell and a head that contains [..]

A

Hershey and Chase; viruses that infect bacteria; protein shell with a tail segment; D N A

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

Phages must infect [..] to reproduce. How does infection begin?

A

bacterial hosts; when the phage injects DNA into the bacterial cell and leaves its protein shell on the surface;

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

The phage DNA replicates in the bacterium and produces [..] that are assembled into […]—these are released by [..]

A

proteins; progeny phage; the host cell

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

DNA structure identified by […] and modeled by [..] and [..].

A

Rosalind Franklin;Watson; Crick

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

DNA composed of four kinds of [..], A, T, C, and G, joined by […] with [..] that come together to form a [..]

A

nucleotides; covalent phosphodiester bonds; two polynucleotide chains; double helix

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

What is a DNA nucleotide composed of?

A

sugar, one of four nitrogenous bases, and up to three phosphate groups

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

What is deoxyribose? How many carbons does it have and what are they identified as?

A

the sugar of DNA nucleotides; it has five carbons, identified as 1′, 2′, 3′, 4′, and 5′

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
17
Q

A nucleotide base is attached to what? A hydroxyl group is attached to what? 1-3 phosphates are attached to what?

A

1′ carbon; 3′ carbon; 5′ carbon

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
18
Q

How many rings do pyrimidines and purines have. Which nucleotides are pyrimidines and which are purines?

A

pyrimidines (thymine and cytosine) - single ring. purines (adenine and guanine) - double ring

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
19
Q

Deoxynucleotide monophosphates that are part of a polynucleotide chain have [..] and are called [..] where N refers to what? Deoxynucleotide triphosphates (d N T P s) are not part of a [..].

A

single phosphates; dNMPs; four bases; polynucleotide chain

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
20
Q

Individual nucleotides are assembled into [..] by the enzyme [..]. It catalyzes the formation of a [..] between the […] and the […] of an adjacent one

A

chains; DNA polymerase; phosphodiester bond; 3′ hydroxyl group of one nucleotide; 5′ phosphate

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
21
Q

Each polynucleotide chain has a [..] , consisting of [..] and [..]

A

sugar-phosphate backbone; alternating sugar; phosphate groups

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
22
Q

DNA polymerase catalyzes chain growth in [..].

A

5 ‘ to 3’ direction

23
Q

The two polynucleotide chains of a double helix form a [..] that follows two rules: The bases of one strand are [..] to the bases in the [..] The bases pair by [..].
The two strands are [..] with respect to their [..].

A

stable structure; complementary; corresponding strand; hydrogen bonding; antiparallel; 5′ and 3′ ends

24
Q

The [..] of D N A is the most common and has a […] of the helix, as does the A-form. [..] D N A is occasionally detected in [..] and is common in [..]. [..] D N A was discovered by [..] and colleagues in 1970 and is commonly found near […].

A

B-form; right-handed twist; A-form; cells; bacteriophage
Z-form; Robert Wells; transcription start sites

25
Q

There is a […] to the sugar-phosphate backbone of […], due to its […] twist of the helix

A

zigzag appearance; Z-form D N A; left-handed

26
Q

The integrity of the nucleotide sequence of D N A is of [..] importance. The general mechanism of D N A replication is the [..] in all organisms. As organisms [..] and became more [..], some differences did develop in the [..] and […].

A

paramount; same; diverged; complex; replication proteins; enzymes

27
Q

Each strand of the […] molecule remains intact during replication. Each parental strand serves as a […] for formation of an […]. Completion of replication results in the formation of […] composed of […]

A

parental DNA; template; antiparallel, complementary daughter strand. two identical daughter duplexes; one parental and one daughter strand

28
Q

A consequence of complementary base pairing is that nucleotides on one strand of the duplex can be used to identify nucleotides on the [..]. After the D N A structure was identified, […] competing models of D N A replication emerged
All shared the idea that the original strands of the duplex act as […].

A

other strand; three; daughter strand synthesis

29
Q

[…] DNA replication- [..] daughter duplex contains […] parental and […] daughter strand. […] DNA replication- […] daughter duplex contains […] parental strands and the other contains […] daughter strands. […] DNA replication- […] daughter duplex contains […] parental and daughter segments

A

Semiconservative; each; one; one daughter strand; Conservative; one; both; both; Dispersive; each; interspersed

30
Q

In 1958, Meselson and Stahl used […] centrifugation to test the models of D N A replication. This method is capable of […] molecules with slightly different molecular weights. They began by growing […] in a medium containing […] for many generations

A

cesium chloride; separating; E. coli; heavy nitrogen;

31
Q

Once all the […] in the culture had DNA containing only the heavy nitrogen, they transferred the bacteria to medium containing 14N. After one round of replication, the DNA of an […] was isolated and centrifuged to determine its [..]. The same was done after successive [..]

A

bacterial cells; aliquot of cells; density;replication cycles.

32
Q

D N A replication is most often […], proceeding in both directions from a single origin of replication in bacterial chromosomes.[…] have multiple origins of replication

A

bidirectional; Eukaryotic chromosomes

33
Q

[…] work showed expansion around the origin of replication, forming a […] , once replication gets under way in bacteria
At each end of the replication bubble is a […] ; replication is complete when the replication forks […].

A

John Cairn’s; replication bubble; replication fork; meet

34
Q

Electron micrograph analysis shows multiple […] on eukaryotic chromosomes. […] contain hundreds to thousands of origins of replication
The human genome may contain more than […] origins.

A

origins of replication; Eukaryotic genomes; 50,000

35
Q

Replication origins have sequences that attract […]. The origin of replication sequence of E. coli is called […], which contains about […] bp of A-T rich D N A
The origin is subdivided by […] 13-bp sequences followed by […] 9-b p sequences.

A

replication enzymes; oriC; 245; three; four

36
Q

Replication origins of bacterial species have […] but not identical sequences. Comparison within and among related species leads to identification of […] the nucleotides found most often at each position of D N A in the […]. The 13-mer and 9-mer sequences of oriC are […] —they play an essential role in replication

A

similar; consensus sequences; conserved region; conserved

37
Q

[…] has the most fully characterized origin-of-replication sequences. The multiple origins of replication are called […]. ARS organization and sequence is similar throughout the […]. Replication origins of other […] are less well characterized.

A

Saccharomyces cerevisiae (yeast); autonomously replicating sequences (ARS); yeast genome; eukaryotes

38
Q

Replication in E. coli requires that […] locate and bind to oriC consensus sequences; these enzymes are […], […], and […].

A

replication-initiating enzymes; D n a A, D n a B, D n a C

39
Q

D n a A first binds the 9-mer sequences, bends the [..] , and breaks […] in the A-T rich 13-mer region. D n a B is a […] that breaks hydrogen bonds to separate the […] and unwind the […]. (DnaC delivers DnaB to the oriC region). The unwound D N A strands are kept from […] by […]

A

DNA; hydrogen bonds; helicase; strands; helix; reannealing; single-stranded binding protein (S S B)

40
Q

DNA polymerase […] DNA strands by adding nucleotides to the […] end of a preexisting strand. They cannot initiate DNA strand synthesis on their own […] are needed; these are synthesized by a specialized R N A polymerase called […]. In E. coli, primase joins DnaA, DnaB, and DnaC at [..]

A

elongates; 3′; RNA; PRIMASE; oriC

41
Q

In E. coli, daughter D N A strands are synthesized by the […]. The […] is a large protein complex found at each replication fork.

A

DNA polymerase III (pol III)holoenzyme; REPLISOME

42
Q

The replisome includes […] different DNA pol III holoenzymes. Replisomes also contain other proteins that hold the two DNA pol III holoenzymes together within the replisome for […] and […] strand DNA synthesis

A

two; leading; lagging

43
Q

One copy of pol III synthesizes one daughter strand continuously in the […] direction as fork progression. This is the […] The other copy of pol III elongates the other daughter strand […] , in the […] direction to fork progression, via short segments (Okazaki fragments). This is the […]

A

same; leading strand; discontinuously; opposing; lagging strand

44
Q

DNA Polymerase I uses two activities to complete replication: Its 5′-3′ […] removes the RNA primers. Its 5′-3′ polymerase activity adds […] to the 3′ end of the DNA segment preceding the primer. […] seals the gap among the resulting DNA segments.

A

exonuclease activity; DNA nucleotides; DNA ligase

45
Q

Each replisome complex carries out replication of the leading and lagging strand […]. DNA polymerases do not have the […] on their own for daughter strand synthesis and progression along the template. To enhance the processivity of polymerases, an […] called the sliding clamp is used

A

simultaneously; momentum; auxiliary protein complex

46
Q

The […] can close around the double-stranded D N A during replication. It has a “doughnut hole” of about into which the […] fits. The sliding clamp […] the DNA pol III core enzyme to the template. It is key to the […] level of pol III activity.

A

sliding clamp; DNA; anchors; high

47
Q

DNA replication is very […], mainly because most DNA polymerases undertake […] to correct occasional errors. Errors in replication occur once about every […] nucleotides in E. coli.
Proofreading ability of D N A polymerase enzymes is due to a 3′-to-5′ […]

A

accurate;DNA proofreading; billion; exonuclease activity

48
Q

Replication errors produce a […] and inability of the mismatched bases to form the appropriate […]. This leads to […] of the 3′ O H into the 3′-to-5′ exonuclease site of the enzyme
Several nucleotides (including the incorrect one) are […] and new nucleotides are […].

A

DNA mismatch; H bonds; displacement; removed; incorporated

49
Q

Unwinding of chromosomes during DNA replication will create […], potentially leading to supercoiling of DNA. Enzymes called […] catalyze controlled cleavage and rejoining of D N A to relieve supercoiling

A

torsional stress; DNA topoisomerases

50
Q

The leading strand of […] can be replicated to the end. The lagging strand requirement for a primer means that lagging strands cannot be […]. This problem is solved by […] at the ends of linear chromosomes, called […]. These repeats ensure that a portion of a telomere can be safely lost without […] to the organism

A

linear chromosomes; completely replicated; repetitive sequences; telomeres; consequence

51
Q

Most human […] experience telomere shortening with successive divisions;
Telomeres are synthesized in […] (and selected other cells) by the […]. The RNA in telomerase is […] to the telomere repeat sequence and acts as a […] for addition of DNA.

A

somatic cells; germ line cells; ribonucleoprotein telomerase; complementary; template

52
Q

The template RNA of telomerase allows […] DNA replication to lengthen the telomere sequences. Once telomeres are sufficiently elongated, DNA replication fills out the chromosome […]. Telomere sequences differ along […].

A

new; ends; species lines

53
Q

In addition to the repetitive DNA sequence, most eukaryotic telomeres also contain a DNA sequence that forms a […]. The T loop protects the telomeres from […] by binding the protein complex […]. Despite protective measures of telomeres with repetitive sequences and T loops, telomere shortening eventually triggers […]. The […] represents the number of cell cycles of a vertebrate cell before the cell succumbs to apoptosis

A

knotted fold (T loop); degradation; shelterin; apoptosis; Hayflick limit

54
Q

Telomere length is important for […] , […], and […]. Some research suggests activating telomerase in somatic cells for […] and […]. However, a majority of […] cells also show activation of telomerase activity, complicating the idea of such action for longevity purposes

A

chromosome stability, cell longevity, and reproductive success; cell longevity and longer life spans; cancer