Foundations Week 1 Flashcards
Glycogen
branched glucose polymer attached to core protein glycogenin (G)
(mature particles in the nucleus have about 55,000 glucose residues!)
Cytoplasmic disease examples
PKU, sickle cell anemia, hemolytic anemia, glycogen storage diseases
Components of the cytoskeleton
Intermediate filaments, microtubules, and microfilaments
Microfilaments
Contain actin. Involved in muscle contraction, cell movement, intracellular transport/trafficking, maintenance of the cell shape, cytokinesis, etc
Intermediate filaments
Cell “scaffolding.” Involved in the maintenance of cell shape, anchoring of organelles, some cell-to-cell junctions.
Examples: keratin, lamin, desmin, etc
Microtubules
Hollow cylinders (the “9+2” structure). Commonly organized by the centrosome.
Involved in the mitotic spindle, cilia & flagella movement, and intracellular transport
Do membrane carbohydrates span the lipid bilayer?
No, they are only present as modifications to lipids and proteins (on the membrane surface facing away from the cytosol)
Cerebroside
glycolipid + monosaccaharide
Ganglioside
glycolipid + oligosaccharide + sialic acid (an acidic sugar)
Does a uniporter transport ions?
No, only molecules down their concentration gradient without energy input.
Normal lab values for Na+ in the blood?
136-145 mEq/L (mM)
Normal lab values for K+ in the blood?
3.5-5.1 mEq/L (mM)
Normal lab values for Mg2+ in the blood?
1.5-2.0 mEq/L (mM)
Normal lab values for Ca2+ in the blood?
8.4-10.2 mg/dL (2.1-2.8 mM)
Plasma membrane disease examples
Cystic Fibrosis, familial hypercholesterolemia, and Muscular Dystrophy (Duchenne type)
What color does euchromatin stain?
Light
What color does heterochromatin stain?
Dark
Where does rRNA synthesis and ribosome subunit assembly take place?
The nucleolus
Nucleus and nucleolus disease examples
Inherited & spontaneous diseases, aneuploidy syndromes, Hutchison-Gilford progeria syndrome, Treacher Collins syndrome
Where does aerobic respiration occur in the mitochondria?
Inner membrane and cristae
What happens in the mitochondrial matrix?
Catabolic processes (TCA, fatty acid oxidation) and anabolic processes (AA synthesis, steroids). Also where the circular genome is found
Mitochondrial disease examples
MCAD, MERRF (myoclonic epilepsy with ragged-red fibers)
Note: mitochondrial diseases present with a wide range of clinical features
Lysosome
Low pH, contains acid hydrolases that degrade and recycle.
Fuse with endosomes and phagosomes. Incomplete degradation forms residual bodies (lipofuscin)
Residual bodies/lipofuscin
Protect cells from toxic effects of incomplete degradation. Accumulate in cells over times (decades).
Lipofuscin = “lipid dark” without stain
Ceroid
abnormal pathological accumulation of lipofuscin or lipofuscin-like bodies
Ceroid accumulation is a hallmark of certain lysosomal storage diseases
Lysosome disease examples
storage diseases, mucolipidoses
Functions of the smooth ER?
lipid & steroid hormone synthesis, detoxification of xenobiotics, stores Ca 2+ ions
Where are glycans added?
the rough ER (NOT the golgi… golgi just modifies)
What side do vesicles enter the golgi apparatus? What side do they exit?
Enter on the cis side, exit on the trans side
remember that the golgi is polarized!
What is it called when glucose is spontaneously, and irreversibly, added to protein?
non-enzymatic glycation
This does NOT happen in the golgi
Steps in the secretory (exocytic) pathway?
rER -> golgi -> vesicle -> plasma membrane
Where does protein “quality control” occur?
In the rER before the protein heads to the golgi. Those that are unfolded will be retained in the rER lumen or degraded
Permanent neonatal diabetes mellitus
Mutations disrupt folding in the rER, formation of disulfide bonds in the rER, and/or proteolytic removal of C peptide in secretory vessicles
Three main destinations as vesicles exit the trans Golgi network?
- Lysosome - need a specific sorting signal for this
- Regulated secretion - specific signal is needed; stored in secretory vesicle until secretion is initiated (e.g. insulin in beta cell of pancreatic islet)
- Constitutitive secretion - proteins without sorting signals follow this default pathway
I Cell Disease
Lysosomal enzymes don’t make it there, thus stuff isn’t degraded. Instead these enzymes are secreted by the cell (in the default pathway) and cause damage to cells/the matrix
Internalization pathways
- phagocytosis - phagosomes fuse with primary lysosome for degradation
- Endocytosis - extracellular molecule internalization; traffic to endosomes
- pinocytosis - extracellular fluid and dissolved substances are internalized
- Receptor-mediated endocytosis - selective endocytosis; cell surface receptors bind specific ligands
- Autophagy - degrades cell components in lysosomes; fuses with primary lysosomes; induced by starvation, damage, and stress
Endocytic pathways
Recycling
Transcytosis across a polarized cell
Delivery to a lysosome for degradation
What is the only cell pathway for degradation of large internal structures/organelles?
Autophagy
What are the two main pathways for degradation in the cell?
Autophagy & the ubiquitin proteasome system
What are the main insulin-responsive tissues in the body?
Fat, liver, and muscle
What does insulin promote in fat tissue?
Uptake of glucose and fats from blood & increases synthesis and storage of lipids
What does insulin promote in the liver?
Uptake of glucose, increase glycogen synthesis, and reduces glycogenolysis
What does insulin promote in muscles?
Uptake of glucose & amino acids from blood & increased protein synthesis
Tissues
cells + extracellular matrix
Specialized functions
Specific cells + specific extracellular properties/organization
Four classic tissues
- Epithelium
- Connective tissue
- Muscle
- Nerve
What embryologic tissue does the epithelial (surface) arise from?
Primarily ectoderm and endoderm
What embryologic tissue does the CT and muscle arise from?
Primarily mesoderm
What embryologic tissue does the nerve tissue arise from?
Primarily from the neuroectoderm (CNS) and neural crest (PNS)
Where is epithelial tissue found?
All internal and external body surfaces, alimentary canal from inner lip to anal skin, line all blood & lymphatic vessels, compose all glands
Characteristics of epithelia
All cells connected to other cells, polarized (apical, basal, lateral, organelles), specializations (apical, lateral, basal), avascular, and stem cells
Note: basal lamina is the only extracellular matrix associated with epithelia
Basal lamina
“Basement membrane”
Extracellular matrix layer synthesized largely by epithelial cells, which adhere to it. The basal lamina is then adhered to connective tissue.
What do desmosomes do?
Connect intermediate filaments in one cell to those in the next cell. Located in the lateral plasma membranes
Cell-cell anchoring junctions
What do adherens junctions do?
Connect actin filament bundles in one cell with that in the next cell. Located in plasma membranes below tight junctions
Cell-cell anchoring junctions
What do tight junctions do?
Seal gaps between epithelial cells near the apical surface
Regulates diffusion between cells & prevents movement of membrane components
What do gap junctions do?
Allow the passage of small water-soluble molecules from cell to cell. Located on the lateral plasma membranes
Channel-forming junction
What do hemidesmosomes do?
Anchor intermediate filaments in a cell to extracellular matrix. Located on the basal plasma membrane
Cell-matrix anchoring junctions
What do actin-linked cell-matrix adhesions do?
Anchor actin filaments in cell to extracellular matrix
Cell-matrix anchoring junctions
What do occluding junctions do?
Seal the basal and apical compartments
Do microtubules bind junctions in epithelial cells?
No
Types of simple epithelia?
Squamous, cuboidal, and columnar
Pseudostratified epithelium
All cells adhere to basal lamina, but not all cells reach free (apical) surface
What does normal airway mucus do?
It travels up the mucociliary escalator. First, it is secreted by the goblet cells, and then it forms a layer that is propelled by cilia on the epithelial cells
Apical specializations
Microvilli, cilia, stereocilia
Function of microvili
Increase surface area, absorption
NOT motile
Function of cilia
movement/propulsion, ATP hydrolysis (by dynein motor “arms”)
Microtubule core that is motile
Stereocilia
Very long micovilli that project from the apical surface of specialized cells present in the male reproductive tract and the inner ear
Infolding
Type of basal specialization that increases surface area
Mitochondria found between infoldings in many epithelial cells
Primary Ciliary Dyskinesia
Cilia function defect, low or no motility, no or poor clearance of airway mucus
Exocrine glands
Secretory product -> duct
Endocrine glands
Secretory product -> blood
Serous gland secretion?
Watery & protein rich
Mucous gland secretion?
Thick + mucin rich
Exocrine secretory mechanisms?
Merocrine (most cells, fusion of secretory vesicles with plasma membrane)
Apocrine (specialized cells, lipid droplet secretion)
Holocrine (specialized cells - cell death and rupture)
Endocrine secretory mechanism?
Merocrine - fusion of secretory vesicles with plasma membrane
What layer of the epidermis is the transition from living to dead cells?
The stratum lucidum