FINAL EXAM CHAPTER 4 Protein Flashcards

1
Q

What do Disulfide bonds cross linked and what is used to form them?

A

-The polypeptide chain can be cross linked
-Formed by the oxidation of two cysteines

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2
Q

In polypeptides, what end is the beginning and what end is the end?

A

-Beginning is the Amino terminal end
-End is the Carboxyl terminal end

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3
Q

What are the general properties of a protein ?

A

-The most abundant substance in most cells except water.
-10-20% by weight

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4
Q

Define Primary structures

A

-Amino acids linked by peptide bonds to form polypeptide chains

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5
Q

Define secondary structures

A

Polypeptide chains can fold into regular structures

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6
Q

Define Tertiary structures

A

Water soluble proteins fold into compact structures

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7
Q

Define Quaternary structure

A

Multiple polypeptide chains can assemble into a single protein

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8
Q

Which bonds rotations are permitted and why?

A

-N-C bond and the C-CO bonds are permitted as they are torsion angles that determine the path of the polypeptide chains and not all torsion angles are permitted

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9
Q

What is an alpha helix and what are the properties of it?

A

-A tightly coiled rodlike structure with the R groups bristling out from the axis of the helix

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10
Q

In an alpha helix, each turn is made of how many amino acids?

A

3.6 amino acids

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11
Q

What are alpha helix and beta sheets stabilized by?

A

Hydrogen bonds

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12
Q

What are beta sheets formed by and what does it look like?

A

-Formed by adjacent beta strands
-it may be parallel, antiparallel or mixed, it can also be almost flat or adopt a twisted conformation

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13
Q

What is a Keratin composed of?

A

Two right handed alpha helices intertwined to form a left handed superhelix called a coiled coil.

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14
Q

What is a Collagen composed of?

A

Three intertwined helical polypeptide chains that form a superhelical cable and these aren’t alpha helices

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15
Q

What stabilizes a tertiary structure?

A

weak vdW bonds

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16
Q

What are motifs?

A

They are combinations of secondary structure found in many proteins

17
Q

What are domains?

A

When some proteins have two or more similar or identical compact structures

18
Q

What is the difference between a motif and a domain ?

A

Motif is a much smaller structure

19
Q

What are 7 ways a protein can denature?

A
  1. Heat
  2. Cold
    3.pH
    4.Mechanical-egg whites
    5.8M urea disrupts
    6.Detergents interact with hydrophobic AA preventing their burial
    7.Organic solvents- ethanol
20
Q

What do molecular chaperones do?

A

-Help prevent aggregation and increase the efficiency of folding

21
Q

What is the average distance between amino acids in a beta sheet and an alpha helix ?

A

Beta sheets-4 angstroms
Alpha Helix- 1.5 angstrom

22
Q

How do proteins fold back ?

A

By progressive stabilization of intermediates rather than by random search