Development and Pattern Formation Flashcards

1
Q

central problems of developmental biology

A

cell fate specification

pattern formation

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2
Q

patternf formation

A

the organization of embryonic cells into a 3-dimensional body plan

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3
Q

What initiates pattern formation?

A

the establishment of axes

expression of different genes along an axis

expression of a single gene in a concentration gradient along an axis

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4
Q

primary patterning

A

establishes the body axes

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5
Q

secondary patterning

A

establishes regional or organ specific axes

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6
Q

At what point in development does patterning take place in humans?

A

mainly during weeks 4-8 of embryonic development

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7
Q

trhee functional classes of genes regulating fly development

A

1) maternal-effect genes
2) segmentation genes
3) homeotic genes

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8
Q

three types of segmentation genes in fly development

A

1) gap genes
2) pair rule genes
3) segment polarity genes

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9
Q

maternal effect genes

A

express in the drosophila egg before fertilization

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10
Q

gap segmentation genes

A

divide the embryo into broad bands

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11
Q

pair rule genes

A

further divide the embryo

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12
Q

segment polarity genes

A

divide the embryo into the final segments that are present in the adult animals

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13
Q

homeotic genes

A

genes that determine the fate or identity of body segments during development

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14
Q

HOX genes

A

first homeotic genes identified in Drosophila

all HOX genes contain a 183 bp motif called the “homeobox”

encode proteins containing a 51 amino acid binding motif called the “homeodomain”

function as transcription factors

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15
Q

vertebrate HOX genes

A

organized into 4 different complexes (A-D) on 4 different chromosomes

reason for multiple complexes is unclear, may be that developmental events are more complex and redundancy ensures normal development

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16
Q

How does the location of a HOX gene in the complex correlate to its expression pattern?

A

genes closer to the 3’ end of the complex have expression patterns that are further anterior to the embryo

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17
Q

two types of colinearity

A

temporal colinearity

spatial colinearity

18
Q

spatial colinearity

A

the order of genes in a cluster/complex maps an axis in the developing embryo

19
Q

temporal colinearity

A

the order of genes reflects their temporal expression during development

20
Q

HOX A1 knockout

A

delayed closure of neural tuve in the hindbrain region, absence of several cranial nerve motor nuclei and sensory ganglia, inner ear defects and basal skull anomalies

21
Q

HOX A3 kockout

A

craniofacial, thyroid, thymic, and cardiac anomalies

22
Q

HOX B4 knockout

A

second cervical vertebra, the axis, transformed into a duplicate first cervical vertebra, the atlas

23
Q

posterior dominance of HOX genes

A

when more than one HOX gene is expressed in a given segment, the HOX gene whose epxression pattern ends more posterior defines the phenotype of that segment

24
Q

HOX D4 Ectopic anterior expression

A

occipital bones transformed into “cervical” vertebrae

25
Q

rules governing HOX gene expression and function in mammals

A

temporal and spatial colinear expression

more HOX genes are expressed in posterior regions

if two HOX genes have overlapping expression patterns, the HOX gene whose expression ends further posterior will be dominant over the HOX gene whose expression pattern extends more anterior

considerable redundancy in function has been demonstrated between paralogous groups of HOX genes

HOX genes demonstrate colinear expression along the anterior-posterior axis of the mbryo as well as along other embryonic axes, including the limbs, GI tract, and female GU tract

26
Q

mutation of human HOX D13

A

causes synpolydactyly

autosomal dominant trait with incomplete penetrance

maps to 2q, the region of the HOX D cluster

sequence analysis demonstrated expansions of a polyalanine stretch in the amino terminal region

27
Q

hedgehog in Drosophila

A

segment polarity segmentation gene

later in development, necessary for patterning imaginal discs and the dorsal epidermis

28
Q

mammalian hedgehog genes

A

three have been identified: sonic hedgehog, indian hedgehog, and desert hedgehog

secreted proteins from organizing center sand epithelium during development

29
Q

organizing centers in the developing limb

A

zone of polarizing activity (ZPA)

apical ectodermal ridge (AER)

nonridge (dorsal) ectoderm

30
Q

zone of polarizing activity (ZPA)

A

located in the proximal, posterior part of the limb bud

Shh is the signaling molecule

defines an anterior-posterior limb axis

31
Q

apical ectodermal ridge (AER)

A

located in the distal edge of the limb bud

FGFs represent the signaling molecules

defines a proximal-distal limb axis

32
Q

nonridge (dorsal) ectoderm

A

located on the dorsal aspect of the limb bud

Wnt-7a represents a signaling molecule

defines a dorsal-ventral limb axis

33
Q

Describe hedgehog signaling in vertebrates

A

Hh inhibits Ptc, which leads to the activation of smoothened and GLI-1,2,3

this activates cell growth and differentiation pathways

34
Q

holoprosencephaly

A

failure of prechordal mesenchyme migration and lack of sonic hedgehog inductive events, loss of function

causes abnormal septation of cerebral hemispheres and abnormality in the development of the ventral embryonic forebrain

35
Q

What nervous system structures form due to high concentrations of Shh?

A

ventral floor plate and motor nuerons in the ventral neural tube

36
Q

What nervous system structures differentiate from areas of the neural tube with lower concentrations of Shh?

A

dorsal areas of the tube differentiate into sensory ganglia/neurons

37
Q

ventral-medial somite

A

the closest to the notochord, very high concentration of Shh, differentiates into the sclerotome

38
Q

sclerotome

A

differentiates into vertebral bodies and ribs

39
Q

dermomyotome

A

precursor of dermis and the body musculature

40
Q

basal cell nevus syndrome

A

arises because of constitutive activation of Patched

leads to skull and rib abnormalities with a predisposition to cancer