Chapter 5 Flashcards
The Structure and Function of Large Biological Molecules
Proteins
50% dry mass of cell. Monomer: Amino acid ; Bond: Polypeptides
Carbohydrates
Both sugars and polymers of sugars. Monomer: Monosaccharides (3-7 Carbons). Bond via glycosidic linkage/bond. CH2O. Form Polysaccharides (few hundred to a few thousand monosaccharides).
Nucleic Acid (DNA/RNA)
Gene Expression. DNA->RNA->Protein synthesis. Monomers: Nucleotides. bond via peptide bond/linkage
Lipids
Hydrophobic Molecule. Consists of C, H & O. Ester linkage between glycerol and fatty acids.
Polymers
Made of many Monomers. i.e. Proteins, Carbohydrates and Nucleic acid. Not lipids.
Dehydration Reaction
Loss of an H2O to form a bond. Requires Energy
Hydrolosis
Adding a water to break down a polymer.
Carbohydrates Uses
Fuel and building material
Carbonyl
–C=O
Aldehyde
Carbonyl is at the end.
Ketone
Carbonyl is in the middle of a carbon chain
Pentoses (5C)
Ribose (Backbone of RNA) ; Deoxyribose (Backbone of DNA)
Hexoses (6C)
Glucose ; Galactose (milk) ; Fructose (fruit)
Disaccharide
Sucrose (sugar cane/beats) ; Maltose (grain) ; Lactose (milk)
Polysaccharides
Starch ; Cellulose ; Glycogen ; Chitin
Lipids
Includes sterols (steroids), fats, waxes and phospholipids. Low oxygen = low polarization = hydrophobic
Sucrose
Glucose + Fructose. In sugar cane/beats.
Maltose
Glucose + Glucose. In grain.
Beta linkage
Lactose
Glucose + Galactose. In milk.
Ester Linkage
Bond between Fatty acids and glycerol. Only for fats and phospholipids. C-O-C=O (last oxygen up).
Fat Molecule Names
Triglyceride. Triacylglycerol. (acyl = fatty acid)
Saturated Fats
No double bonds, maximum number of hydrogens.
Unsaturated fats
At least one double bond. Usually liquid at room temp.
Functional Groups in monomers
Amino Acid has an amine and a carboxyl. Fatty acid has a carboxyl and a methyl.
Proteins 8 uses
Hormonal, Contractile/Motor, Receptor, Structure, Enzymes, Storage, Transport and Defensive
Four Main classes of large molecules
Carbohydrates, Proteins, Nucleic Acids, and Lipids
Starch
Plants storage. Polymer of glucose monomers. Alpha Linkage. Low number of branches.
Glycogen
Animal Storage. Vertebrates store in liver and muscle cells. Branches everywhere.
Cellulose
Makes up most of the cell wall. Polysaccharide made of glucose. Beta linkage.
Chitin
Carbohydrate used for exoskeleton. Beta linkage
Phospholipid
Made up of a glycerol, 2 fatty acids and a phosphate group. Major component of cells, they’re major constituents for cell walls. Have a head (Hydrophilic) and a tail (Hydrophobic).
Steroids (Sterols)
4 fused rings + a functional group. i.e. cholesterol
Cholesterol
A steroid, crucial molecule in animals. Precursor for many other steroid synthesis. Common component for animal cell membrane.
Polypeptides
A bond between amino acids. A polymer of amino acids is called a polypeptide.
Amino Acid
Building blocks of proteins. 20 different amino acids. Consists of an amino, carboxyl, hydrogen group, & a variable group signified by “R.” All of these around an alpha/central carbon. Held together by peptide bonds
Nonpolar Amino Acids
Has hydrophobic side chains
Polar Amino Acids
Has hydrophilic side chains
Acidic Amino Acids
Has negative charge side chains
Basic Amino Acids
Has positive side chains
Protein Structure Levels
- Primary Structure: Linear Chain of Amino Acids
- Secondary: Regions stabilized by hydrogen bond between atoms of the polypeptide backbone
- Tertiary: 3D shape stabilized by interactions between side chains
- Quaternary: Association of 2 or more polypeptides.
Denaturation
Breakdown of protein shape
X-ray Crystallography
Used to determine 3D shape of protein. Depends on the diffraction of an x-ray beam by the atoms of a crystallized molecule
Deoxyribonucleic acid (DNA)
Inherited materials. Direction for its own replication
Gene
Discrete unit of inheritance. Programs amino acid sequence of a polypeptide
Ribonucleic Acid (RNA)
A nucleic acid present in all living cells that has structural similarities to DNA but is most often single-stranded.
mRNA
messenger RNA: molecule interacts w/ the cell’s protein synthesizing machinary to direct production of a polypeptide
Nucleotides
Composed of 5-carbon sugar, nitrogen containing (nitrogenous) base, and 1-3 phosphate groups.
Types of Bases for Nucleic Acids
- Pyrimidine: 1 6C-membered ring of carbon + nitrogen atoms. Cytosine and Thymine.
- Purines: 6C-membered ring + 5C-membered ring. Adenine and Guanine.
Sugar + Nucleic Acids
- DNA = deoxyribose + Sugar + triphosphate
- RNA = ribose + Sugar +triphosphate
DNA Antiparallel
5’-TAGC-3’
3’-ATCG-5’
Amphiphatic
Contains both hydrophilic and hydrophobic
Phosphodiester
Amino acid bonded to an amino acid.