Chapter 20 Flashcards

1
Q

biotechnology

A

the manipulation of organisms or their components to make useful products

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2
Q

nucleic acid hybridization

A

the base pairing of one strand of a nucleic acid to complementary sequence on strand from another nucleic acid molecule
o The key to DNA sequencing

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3
Q

genetic engineering

A

direct manipulation of genes for practical purposes

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4
Q

DNA sequencing

A

determining the complete nucleotide sequence of a DNA molecule

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5
Q

Deoxyribonucleotide chain termination sequencing (DNA sequencing)

A

technique in which one strand of DNA fragment is used as a template for synthesis
o Strands are differentiated by length

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6
Q

Sequencing by synthesis (DNA sequencing)

A

technique in which electronic monitors identify which of four nucleotides is added

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7
Q

third generation sequencing

A

involves moving a single strand of DNA molecule through a small pore in a membrane and detecting the bases using an electrical current (measure different lengths of time in which base interrupts current)

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8
Q

DNA cloning

A

preparing well-defined segments of DNA in multiple identical copies

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9
Q

plasmids

A

small, circular DNA molecules that are replicated separately

o Found only in bacteria

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10
Q

recombinant DNA

A

a molecule containing DNA from 2 different sources

o Taking one strand of DNA and combining it with another strand of DNA

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11
Q

Gene cloning

A

the production of multiple copies of a single gene

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12
Q

cloning vector

A

DNA molecule that carries foreign DNA into a host cell and replicates there, producing many copies of itself and the foreign DNA

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13
Q

restriction enzymes

A

enzymes that cut DNA molecules at a limited number of specific locations

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14
Q

restriction site

A

a particular short DNA sequence which is recognized by restriction enzymes

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15
Q

restriction fragments

A

sequences containing 4-8 nucleotide pairs

o Result from cutting DNA strand by restriction enzyme

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16
Q

sticky-end

A

double-stranded restriction fragments which have at least 1 single-stranded end
o They result when useful restriction enzymes cleave the sugar phosphate backbones
o Can form H bond base pairs with complementary sticky ends on DNA molecules cut with the same enzyme

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17
Q

DNA ligase

A

catalyzes the formation of covalent bonds that close up sugar-phosphate backbones of DNA strands
o Glues together the H bonding of the sticky end to other DNA molecules

18
Q

Gel electrophoresis

A

uses gel to separate mixture of nucleic acids on the basis of size, electrical charge, and other physical properties

19
Q

Polymerase chain reaction

A

start with genomic DNA to get several copies of desired gene
(Don’t worry about stuff below.)
o Denaturation: Heat to separate
o Annealing: Cool to recombine and form H bonds b/t primers and ends of target sequence.
o Extension: DNA polymerase adds nucleotides to 3’ end of each primer (5’→3’ direction)
o Taq polymerase: DNA polymerase that can withstand heat
o Primer sequences are chosen only so they hybridize only to sequences at opposite ends of target segment (3’ end of each strand)
o Number of molecules= 2^n where n is the number of cycles

20
Q

Extension (PCR)

A

DNA polymerase adds nucleotides to 3’ end of each primer (5’→3’ direction)

21
Q

Taq polymerase (PCR)

A

DNA polymerase that can withstand heat

22
Q

expression vector

A

a cloning vector that contains an active bacterial promoter upstream of a restriction site where eukaryotic gene can be inserted into the correct reading frame

23
Q

electrocorporation

A

a brief electrical pulse applied to a solution containing cells which creates temporary holes in plasma membranes through which DNA can enter

24
Q

nucleic acid probe

A

short, single-stranded complementary nucleotide used to do nucleic acid hybridization with mRNA
o Can be DNA or RNA
(nucleic acid complementary to another nucleic acid)

25
in situ hybridization
technique using the nucleic acid probe which allows us to see the (fluorescent) mRNA intact in the organism
26
RT-PCR (reverse transcriptase-polymerase chain reaction)
mRNA detection technique used to compare amounts of specific mRNA in several samples at a time o 1) Reverse transcriptase is used to make a single-stranded DNA reverse transcript of each mRNA molecule o 2) The adenine found in the poly-A tail allows for strand of poly-dT’s to be used as a primer for synthesis of DNA strand o 3) Second strand called cDNA is synthesized with DNA polymerase
27
systems approach
studying large group of genes
28
DNA microarray assays
``` technique in which you isolate the mRNA’s made in a cell and use the molecules as templates for making corresponding cDNA’s by reverse transcription o DNA microarrays consist of lots of single-stranded DNA fragments representing different genes on a class slide ```
29
in vitro mutagenesis
mutations are introduced into the cloned gene, and when mutated gene returns to cell it ‘knocks out’ normal cellular components of gene
30
RNAi (RNA interference)
used synthetic double-stranded RNA molecules matching particular sequence of gene to block RNA translation
31
Genome-wide association studies
large-scale analysis in which researchers search for genetic markers (DNA sequences that vary in the population)
32
polymorphisms
variations in coding or noncoding DNA sequence among a population
33
single-nucleotide polymorphism
single base-pair site in which variation is found in at least 1% of population • Crossing over between marker and gene is unlikely, so marker and gene will likely always be inherited together
34
organismal cloning
cloning which produces organisms genetically identical to parent
35
stem cell
relatively unspecialized cell that can reproduce indefinitely and differentiate into specialized cell types
36
totipotent
mature cells which have the potential to ‘dedifferentiate’ and give rise to specialized cell types in an organism
37
stem cells
o Isolated from cell during the blastula stage | o Reproduce indefinitely
38
adult stem cells
not able to give rise to all cell types in organism o serve to replace nonreproducing specialized cells in body o Can differentiate into different types of specialized cell types with addition of growth factors
39
pluripotent
have the ability to differentiate into many different cell types
40
Induced pluripotent stem cells (iPS)
transforming differentiated cells using a retrovirus to gain cloned copies of regulatory genes o Pluripotency is restored! o Uses of iPS cells: • Cells from patients suffering diseases can be reprogrammed to become iPS cells to be studied for treatment. • Patients own cells can be reprogrammed into iPS cells which replace nonfunctional tissues