Chap 1: The Chemical Foundations of BioChem Flashcards
Thermodynamics
Study of Energy
Reactions
Reactants —> Products
First Law of Thermodynamics
Energy is converted
Cannot be created nor destroyed only converted
Forms of energy
Kinetic
Potential
Heat
Chemical
Second Law of Thermodynamics
The entropy (chaos) of the universe (S) is always increasing
Third Law of Thermodynamics
The entropy of a perfect crystalline at 0 K is 0
Gibbes Free Law
Δ G = Δ H − T Δ S
H = Enthalpy
T = Temperature (K)
S = Entropy
Spontaneous means
It is likely to happen in nature
Free energy standard state conditions
T = 298K
P = 1 atm
Solutes = 1 M
pH = 7
When products have less energy vs when products have more energy
Favorable (spontaneous) vs unfavorable
Coupling Reactions
A process in which unfavorable reactions can be made energetically possible by linking them to favorable ones
Equilibrium
Chemical state when the rate of the forward and reverse state of a reaction are equal
Kinetics
the field of study that analyzes the rates of chemical reactions
Rate Law
the rate of any chemical reaction that can be described using mathematical expressions
Catalyst
Biological enzymes that speeds up a reaction by lowering the activation energy
Functional Group
Fragments of a molecule (ex. hydroxyl or carbonyl)
Reactions mechanism
Explains the making and breaking of bonds at the molecular level
Hydrogen Bond
Weak bond (easily formed and broken)
*Bonds with electro negative elements (ex. Oxygen & Nitrogen)
Provide electron vs Accepts proton
Acceptor vs Donor
Arrhenius
Acids vs Bases
Acids: H+ donors
Bases: generates OH-
Bronsted-Lowry
Acids vs Bases
Acids: H+ donors
Bases: H+ acceptors
pKa =
- log Ka
Ka =
[H+] [A-]/[HA]
pH =
-log[H+]
^pKa =
low pH
Henderson-Hasselbalch Equation
pH = pKa + log[A-]/[HA]
Buffering Capacity
the pH at which a weak acid or conjugate base system will buffer
The capacity of a buffer to resist changes in pH upon addition of protons or hydroxide ions depends on
+ The pH of the buffer
+ the pKa of the weak acid in the buffer
+ the concentration of the weak acid and its conjugate base in the buffer
pka represents
the acidity of a particular molecule
ka represents
the equilibrium constant of an acid’s dissociation reaction