ch 4.3 nonproteobacter Flashcards

1
Q

What are the four categories of nonproteobacteria

A

chlamydia
spirochetes
CFB group
planctomycetes

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

what is C. trachoma’s

A

human pathogen that causes trachoma a disease of the eye that leads to blindness and sexually transmitted disease lymphogranuloma venereum

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

describe members of the genus chlamydia

A

gram negative, obligate intracellular pathogens that are resistant to cellular defenses giving them ability to spread from host to host rapidly via elementary bodies

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

what are elementary bodies

A

endospore like form of intracellular bacteria that enter epithelial cell where they become metabolically and reproductively active

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

What are spirochetes characterized as

A

spiral shaped bodies, most are very thin making it difficult to examine gram-stained preparations under brightfieqld microscope

highly motile, use axial filament to propel themselves

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

what is axial filament

A

similar to flagellum but it wraps around the cell and runs inside the cell body of a spirochete in the periplasmic space between outer membrane and plasma membrane

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

Examples of spirochetes

A

Genus treponema which includes
T. Pallidum pallidum
T palidum pertenue
T. pallidum carateum
t. pallidum endemicum

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

what causes syphilis

A

T pallidum pallidum

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

what do other T pallidum subspecies cause

A

tropical infectious diseases of skin bones and joints

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

What does Borrelia contain

A

B. burgodrferi (Lyme disease)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

What similarities do the CFB group have

A

sequence of nucleotides in their DNA

rod-shaped bacteria adapted to anaerobic environments such as gums, gut and rumen

avid fermenters able to process cellulose in Ruben `

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

what are cytophaga

A

motile aquatic bacteria that glide

inhabit human mouth and may cause severe infectious disease

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

what do bactericides include

A

species in the human large intestine 30% of gut

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

how much bactericide cells in 1g human gut

A

100 billion

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

what is the relationship between us and bacteroids

A

mutualistic
they get nutrients and we get ability to prevent pathogens from colonizing large intestine

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

where are planctomycetes found

A

aquatic environments, freshwater, saltwater and brackish water

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
17
Q

what makes planctomycetes unusual

A

they reproduce by budding

mother cells forms a bud that detaches from the mother and lives as an independent cell (motile and not attached to a surface

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
18
Q

describe nonproteobacteria morphology and unusual characteristics of chlamydia

A

Gram negative, coccoid or ovoid

obligatory intracellular bacteria can cause chlamydia, trachoma and pneumonia

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
19
Q

describe nonproteobacteria morphology and unusual characteristics of bacteroides

A

gram negative bacillus

obligate anaerobic bacteria
In GI tract
usually mutualistic but can be opportunistic pathogen

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
20
Q

describe nonproteobacteria morphology and unusual characteristics of cytophaga

A

gram negative bacillus

motile by gliding
live in soil or water
decompose cellulose
may cause disease in fish

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
21
Q

describe nonproteobacteria morphology and unusual characteristics of fusobacterium

A

gram negative bacillus with pointed ends

anaerobic
form biofilms
can cause periodontitis, ulcers

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
22
Q

describe nonproteobacteria morphology and unusual characteristics of leptospira

A

spiral shaped bacterium, gram negative-like (view in dark field

aerobic
abundant in shallow water reservoirs
infects rodents and domestic animals

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
23
Q

describe nonproteobacteria morphology and unusual characteristics of treponema

A

gram-negative-like spirochete, very thin, use dark field microscope

motile
to not grow in culture
causes syphilis

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
24
Q

describe nonproteobacteria morphology and unusual characteristics of borrelia

A

gram-negative-like spirochete

causes Lyme disease

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
25
Q

what are phototrophic bacteria

A

bacteria that are not a taxon but a group that use sunlight as primary source of energy

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
26
Q

what happens when phototrophic bacteria do not produce oxygen

A

they perform an oxygenic photosynthesis except cyanobacteria

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
27
Q

what are bacteriochlorophylls

A

green, purple or blue pigments that similar to chlorophyll in plants

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
28
Q

what do purple surfer bacteria do

A

oxidize hydrogen sulfide into elemental sulfur and sulfuric acid and get their purple color from bacteriochlorophylls and carotenoids

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
29
Q

what are chromatium

A

purple sulfur gammaproteobacteria that are strict anaerobes and live in water

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
30
Q

how do chromatium suvive

A

use carbon dioxide as their only source of carbon and need sulfites as electron donors to survive

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
31
Q

what are green sulfur bacteria

A

bacteria that use sulfide for oxidation and produce large amounts of green bacteriochlorphyll

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
32
Q

what are chlorobium

A

free sulfur bacteria that use 4 types of chlorophyll for photosynthesis that is stored in chlorosomes

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
33
Q

what makes purple non-sulfur bacteria different from purple sulfur bacteria

A

they use hydrogen rather than hydrogen sulfide for oxidation

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
34
Q

what is an example of purple nonsulfer bacteria

A

rhodospirillum

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
35
Q

characteristics of rhodospirillum

A

are facultative anaerobes that are pink and can metabolize nitrogen

potential to produce biological plastic and hydrogen fuel

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
36
Q

how are green non sulfur bacteria different to green sulfur bacteria

A

they use substrates other than sulfides for oxidation

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
37
Q

what is chloroflexus

A

green non sulfur bacterium that is orange when growing in the dark but green when it grows in sunlight.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
38
Q

what does chloroflexus have in common with chlorobium

A

it stores bacteriochlorophyll in chlorosomes

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
39
Q

why kind of photosynthesis does chloroflexus perform

A

an oxygenic using organic sulfites or hydrogen as electron donors

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
40
Q

what does chloroflexus have in common with cytophaga

A

it does not have flagella but can glide

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
41
Q

what temperature does chloroflexus live

A

35-70 C making it thermophilic

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
42
Q

where do cyanobacteria get their color

A

chlorophyll contained in cells

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
43
Q

describe cyanobacteria

A

perform oxygen photosynthesis producing megatons of gaseous oxygen

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
44
Q

where do cyanobacteria live

A

marien and freshwater, soil and rocks in a wide range of temperatures including antarctic

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
45
Q

how do cyanobacteria live

A

as unicellular organisms or in colonies, can be filamentous forming sheaths or biofilms

can fix nitrogen, converting nitrogen into nitrites and nitrates that other species can use

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
46
Q

describe photosynthesis in cyanobacteria

A

oxygenic, using chlorophyll like plants and algae

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
47
Q

what gives cyanobacteria their blue color

A

phycocyanin and cyanophycin in organelles called phycobillisomes and folds of the cellular membrane

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
48
Q

how does cyanobacteria affect human health

A

microcystis can form harmful blooms releasing toxins that are wild life and humans, can cause tumors of liver and nervous system diseases

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
49
Q

What identifies a prokaryote as gram positive

A

a multiple layer matrix of peptidoglycan forming the cell wall that readily retains the crystal violet stain

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
50
Q

what is another characteristic to classify gram-positive prokaryotes

A

The guanine to cytosine ratio in the DNA and composition of 16S rRNA subunits

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
51
Q

what does actinobacteria comprise

A

high G+C gram-positive bacteria that have 50% guanine and cytosine nucleotides

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
52
Q

what does the bacilli comprise of

A

low G+C nucleotides in dna

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
53
Q

What do actinobacteria look like

A

can be thin filamentous bringing rods to coccobacilli some are large and complex while others are small independent organsisms

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
54
Q

where do actinobacteria live

A

most live in soil but some are aquatic, most are aerobic

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
55
Q

what is a distinctive feature of actinobacteria

A

several different peptidoglycan in the cell wall

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
56
Q

What are actinomyces

A

a genus of actinobacteria that play an important role in soil ecology and some are human pathogens

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
57
Q

what’re do actinomycete live

A

the Human mouth and cause things such as periodontitis and oral abscesses

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
58
Q

what is A. israelii

A

a species of actinomycete that causes endocarditis

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
59
Q

what is the genus mycobacterium

A

bacilli covered with mycelia acid coat

60
Q

what does mycelia acid coat do

A

protects bacteria from some ABX, prevents from drying out and blocks penetration of gram stain reagents

61
Q

what must you use to stain mycobacterium

A

acid fast staining

62
Q

why is the genus mycobacterium important

A

its a cause of a diverse group of infectious disease TB and leprosy

63
Q

what do bacteria in the genus corynebacterium contain

A

diaminopimelic acid in their cell walls and often form palisades or pairs of rod shaped cells resembling the letter v

64
Q

what are metachromatic granules

A

intercellular storage of inorganic phosphates that are useful for identification of corynebacterium

65
Q

what is a pathogenic species of corynebacterium

A

diphtheria

66
Q

what does the genus bifidobacterium consist of

A

filamentous anaerobes that are found in GI tract, vagina and mouth

67
Q

What does the genus gardnerella contain

A

G. vaginalis

68
Q

what does it mean that gardnerella is gram variable

A

its small coccobacilli do not show consistent results when stained but is considered gram positive due to high G+C

69
Q

What does G. vaginalis cause

A

bacterial vaginosis

70
Q

Describe actinobacteria morphology and characteristics of

A

gram-positive
in colonies
shows fungus like threads

facultative anaerobe, in soil, decompose organic matter in human mouth and may cause gum disease

71
Q

Describe actinobacteria morphology and characteristics of arthrobacter

A

gram positive bacillus or coccus

obligate aerobes that divided by snapping forming v like pairs of daughter cells
degrade phenol and can be used in bioremediation

72
Q

Describe actinobacteria morphology and characteristics of bifidobacterium

A

gram positive filamentous actiobacterium

anaerobes commonly found in the human gut microbiotia

73
Q

Describe actinobacteria morphology and characteristics of frank

A

gram-positive fungus like (filamentous) bacillus

nitrogen fixing bacteria, live in symbiosis with legumes

74
Q

Describe actinobacteria morphology and characteristics of corynebacterium

A

gram positive fbacillus

aerobes or facultative anaerobes
form palisades
grow slow
require enriched media in culture
casuses diptheria

75
Q

Describe actinobacteria morphology and characteristics of gardnerella

A

gram-variable coccobacillus

colonize human vagina, may alter microbial ecology leading to vaginosis

76
Q

Describe actinobacteria morphology and characteristics of micrococcus

A

gram positive coccus, form microscopic clusters

ubiquitous in the environment and on the human skin
oxidase-positive, some are opportuistic

77
Q

Describe actinobacteria morphology and characteristics of mycobacterium

A

gram-positive acid fast bacillus

slow growing, aerobic resistant to drying and phagocytosis
covered in mycelia acid
can cause leprocy and TB

78
Q

Describe actinobacteria morphology and characteristics of nocardia

A

weakly gram positive bacillus
forms acid fast branches

may colonize gingiva
may cause severe pneumonia and inflammation of skin

79
Q

Describe actinobacteria morphology and characteristics of propionibacterium

A

gram-positive bacillus

aerotolerant anaerobe
slow growing
P. acnes reproduces in human sebaceous glands and can contribute to acne

80
Q

Describe actinobacteria morphology and characteristics of rhodococcus

A

gram- positive bacillus
strict aerobe
used in biodegradation of pollutants
can be plant pathogen or cause pneumonia

81
Q

Describe actinobacteria morphology and characteristics of streptomyces

A

gram-positive fungus like bacillus

> 500 species
aerobic spore forming bacteria,
scavengers, decomposers found in soil
used as antibiotic

82
Q

describe clostridium

A

rod shaped bacteria that are obligate anaerobes that produce endospor3es and cane found in anaerobic habitats like soil and aquatic sediments rich in organic nutrients

83
Q

what does C. perfringens cause

A

3rd most common cause of food poisoning in the US and causative agent of gas gangrene

84
Q

when does gas gangrene occur

A

when C. perfringens endospores enter a wound, germinate and become viable bacteria producing a toxin that can cause necrosis of tissue

85
Q

What does C. tetani cause

A

a neurotoxin to enter neurons and cause tetanus

86
Q

what does C. botulinum produce

A

botulism neurotoxin that blow the release of acetylcholine in neuromuscular junctions can be used to treat muscle issues (botox)

87
Q

Describe lactobacillales

A

comprises low G+C gram-positive bacteria that include bacilli and cocci

88
Q

what genera are in lactobacillales

A

lactobacillus
leuconostoc
enterococcus
streptococcus

89
Q

describe streptococcus

A

is responsible for infectious disease in humans usually classified by serotypes called lance field groups and their ability to lyse red blood cells when grown on blood agar

90
Q

what are S. progenies

A

they belong to lance field group a, b hemolytic streptococcus

91
Q

what is S. progenies considered

A

a pyogenic pathogen because of the associated pus production with infections it causes

92
Q

what does S. pyogenes cause

A

pharyngitis
impetigo
necrotizing fasciitis

93
Q

what are nonpyogenic streptococci

A

group of streptococcal species that are not a taxon bur are grouped because they inhabit the human mouth. they do not belong to a lance field group

94
Q

what is S. pneumoniae

A

a streptococcus that does not belong to a lancfield group

95
Q

describe S. pneumoniae

A

diplococci, pairs of cells instead of Long chains like most streptococci

96
Q

what can S. Pneumoniae cause

A

pneumonia
meningitis
septicemia
osteomyelitis
endocarditis

97
Q

What are the two important bacilli genera

A

bacillus and staphylococcus

98
Q

describe bacteria in the bacillus genus

A

bacillus in shape and can produce endospores

include aerobes or facultative anaerobes

99
Q

what are bacillus used for

A

production of abx, enzymes, detergents

100
Q

two notable pathogens that belong to the genus bacillus

A

B. anthraces (anthrax)
B. cereus (food poisoning)
B. thuringiensis (substances used as insecticides)

101
Q

describe B. cereus

A

Rod shaped species that forms chains, colonies appear milky white

102
Q

what genus does staphylococcus belong to

103
Q

describe staphylococcus

A

facultative anaerobic, halophilic, nonmotile,

includes S. epidermis and s aureus

104
Q

what does s. aureus cause

A

skin infection that produce boils, carbuncles, cellulitis or impetigo, can cause enterotoxin, can cause toxic shock syndrome

105
Q

describe mycoplasma

A

they do not possess a cell wall and cannot be gram stained but is still included with low G+C bacteria

106
Q

what makes mycoplasma unique

A

they are pleomorphic

107
Q

what does pleomorphic mean

A

they may take on a variety of shapes and can even resemble animal cells

108
Q

describe low G+C positive bacteria morphology and characteristics of bacillus

A

large, gram positive bacillus

aerobes or facultative anaerobes
form endospores
cause anthrax
may cause food poisoning

109
Q

describe low G+C positive bacteria morphology and characteristics of clostridium

A

gram-positive bacillus
strict anaerobes
form endospores
cause tetanus, gas gangrene botulism and colitis

110
Q

describe low G+C positive bacteria morphology and characteristics of enterococcus

A

gram-positive coccus
forms microscopic pairs in culture resembling streptococcus pneumoniae

anaerobic aerotolerant bacteria
in GI tract, may cause UTI

111
Q

describe low G+C positive bacteria morphology and characteristics of lactobacillus

A

gram positive bacillus
facultative anaerobes,
ferment sugars into lactic acid
part of vaginal microbiota
used as probiotics

112
Q

describe low G+C positive bacteria morphology and characteristics of leuconostoc

A

gram-positive coccus, may form microscopic chains in culture

fermenter, used in food industry to produce sauerkraut and kefir

113
Q

describe low G+C positive bacteria morphology and characteristics of mycoplasma

A

smallest bacteria, appear pleomorphic under electron microscope

no cell wall
classified due to genome
causes walking pneumonia

114
Q

describe low G+C positive bacteria morphology and characteristics of staphylococcus

A

gram- positive coccus, forms microscopic clusters that resemble grapes

tolerate high salt concentration
facultative anaerobes, produce catalase, s aureus can also produce coagulase and toxins

115
Q

describe low G+C positive bacteria morphology and characteristics of streptococcus

A

gram positive coccus, forms chains or pairs in culture

diverse, classified in groups based on sharing certain antigens, some species cause hemolysis and pay produce toxins responsible for human disease

116
Q

describe low G+C positive bacteria morphology and characteristics of ureaplasma

A

similar to mycoplasma

part of human vaginal and lower Urinary microbiota can lead to inflammation, scarring and infertility

117
Q

what does the true or root of the tree represent

A

common ancient evolutionary ancestor (last common ancestor)

118
Q

what are the branches on phylogenic tree

A

evolutionary decendants

119
Q

what are deeply branching bacteria considered

A

the first of the non LUCA forms of life

120
Q

what can we hypothesize about ancient bacteria

A

they were thermophiles or hyperthermophiles (thrived at high temps)

121
Q

what is acetothermus paucivorans

A

a gram negative anaerobic bacterium discovered in sewage sludge deepest branching bacteria

122
Q

What is the class aquificae

A

deeply branching bacteria that are adapted to the harshest conditions on earth. live in hot springs at temps higher than 90 C

123
Q

where are a. Pyrophilus found

A

near underwater volcanoes and thermal ocean vents where water temp reaches 138C. use inorganic substances as nutrients. reduces nitrogen in anaerobic conditions

124
Q

describe the class thermotogae

A

mostly hyperthermophilic with some mesophilic anaerobic gram-negative bacteria whose cells are wrapped in a sheath-like outermsmbrane called toga

125
Q

what makes thermotogae cell wall unusual

A

it contains diaminopimelic acid and d-lysine

126
Q

where does T. maritime live

A

near the thermal ocean vents

127
Q

what is D. radiodurans considred

A

a polyextremeophil due to ability to survive in many different extreme conditions. it can withstand ionizing radiation that kills other known bacteria

128
Q

How does archer differ from bacteria

A

the cellmembrain is composed of ether linkages with branded isoprene chains instead of star linkages with unbranched fatty acids

cell walls lack peptidoglycan but contain similar substances
(psuedopeptidoglycan)

the genomes are larger and more coplex

129
Q

What habitat are arches found in

A

any, including those hostile to most other forms of life

130
Q

what metabolism can archer perform that bacteria and eukaryotes cannot

A

methanogenesis

131
Q

what are the five major phyla of archaea

A

crenarchaeota, euryarchaeota, korarchaeota, nanoarcheota thaumarchaeota

132
Q

are arches known to be associated with infectious disease

A

no, also not in human microbiota

133
Q

what are crenarchaeota

A

a class of archaea that is extremely diverse and differ vastly in morphology and requirements for growth

134
Q

where are all crenarchaeota found

A

aquatic environments and most abundant microorganism in oceans

135
Q

what are archaea of the genus sulfolobus

A

thermophiles that prefer tens around 70-80C and acidophilus that prefer PH of 2-3

136
Q

what conditions do sulfolobus live in

A

aerobic or anaerobic environments

137
Q

how do sulfolobu live in the presents of oxygen

A

with metabolic processes similar to heterotrophs

138
Q

how do sulfolobus live in anaerobic environments

A

they oxidize sulfur to produce sulfuric acid that is stored in granules

139
Q

what are sulfolobus used for

A

production of thermostable acid-resistant proteins called affitins

140
Q

what do affitins do

A

they can bind and neutralize various antigens

141
Q

describe thermoproteus

A

anaerobic organisms with an optimal growth temp of 85, they flagella and are motile

have a cellular membrane in which lipids from a monolayer

metabolisms is autotrophic

reduce sulfur or molecular hydrogen and use carbon monoxide or dioxide as a source

deepest branching genus of archaea

142
Q

What classes can be described as methanogens

A

methanobacteria
methanococci
methanomicrobia

143
Q

what makes methanogens unique

A

they can reduce carbon dioxide in the pretense of hydrogen producing methane,

144
Q

what environments do methanogens live in

A

themes extreme environments from below freezing to above boiling , in hot springs and deep under ice, they may live on mars.

145
Q

what is included in the class halobacteria

A

halophilic archaea,

146
Q

what do halo bacteria require

A

high concentrations of sodium chloride in their aquatic environment, close to 36% such as the Dead Sea

147
Q

what is remarkable about halobacteria

A

they perform photosynthesis using the protein bacteriorhodopsin which give them and their bodies of water a purple color.