Block 1 - Foundations of Medicine - Weeks 1-3 Flashcards
What type of cell looses normal function?
A cancer cell
How are cancer cells arranged?
They’re disorganised
6 characteristics of cancer
- Loss of normal controls of cell division
- Can’t keep the cell inside tissue boundaries
- Evades bodily defence mechanisms
- Recruits blood vessels to the tumour
- Migrates into the blood/lymphatics
- Establishes tumours in the ‘wrong’ tissue
How thick is a specimen for a light microscope?
1cm
What is the difference between bright field and fluorescence light microscopy?
Bright field: Dense stains and dead specimins
Fluorescence: Increased sensitivity and precise localisation to see organelles
How many membranes does mitochondria have?
2
How does the mitochondria divide and why?
Independently as they have their own DNA
2 reactions that occur in the mitochondrial matrix?
Citric cycle reactions
Fatty acid metabolism
How abundant are peroxisomes compared to mitochondria?
3 reactions
Less abundant than mitochondria
Metabolism, detoxification and oxidative reactions
What do oxidative reactions generate in peroxisomes?
What enzyme is involved?
Hydrogen peroxide –> Water and Oxygen
By catalase
What happens to molecules at the golgi apparatus?
Example
They are modified
e.g. Glycosylation (adding a polysaccharide chain)
What stores molecules ready for a signal?
Secretory granules
What will a vesicle transfer the molecule to when it is taken up by the plasma membrane?
Endosome
What are the 3 types of filaments in the cytoskeleton of the cell?
Intermediate
Actin
Microtubules
What are intermediate filaments and where are they found?
Structual components
Throughout the cell
Where are actin filaments found?
Near the cell surface
Where are microtubules found?
Throughout the cell
Extends from a centrosome in the cell centre
What 2 things do viruses hijack in the cell other than the cytoskeleton network?
Synthesis pathways and the endocytotic pathway
8 roles of the cytoskeleton
Basis of cilia and microvilli, Cell division, Cell shape, Contractility, Internal organisation, Mechanical strength, Movement, Vesicle transport
What does a low carb diet mean?
Low sucrose
4 main minerals absorbed in the diet?
Calcium, Sodium, Iodine and Iron
How much more energy dense is fat compared to glucose?
2x as energy dense
What are the two differences between the glycogen and fat store?
Glycogen: Finite (ST)
Fat: Infinite (LT)
4 places in the body where anaerobic respiration is needed?
Red blood cells, kidney medulla, eye lens and tumour cells
What happens to lactate?
It is converted back to pyruvate, glucose or glycogen in the liver by gluconeogenesis in the CORI CYCLE
How many carbon atoms does glucose phosphate have?
6 carbon atoms
What is each molecule made by/ what does each molecule produce in glycoslysis?
GP made by 2 ATP
Pyruvate made by 4 ADP and NAD –> 4 ATP and 1 NADH
Which stage of the link reaction produces the reduced coenzymes?
Pyruvate –> Acetate (1st stage)
What theory is oxidative phosphorylation?
Chemiosmotic theory
How much ATP is produced from NAD and FAD?
10 NAD (3 ATP each) 2 FAD (2 ATP each)
Where does gluconeogenesis occur?
Liver and kidney
How is acetyl CoA converted to ketones?
By ketogenesis
What are the three waste products from ketogenesis?
Acetoacetate, acetone and beta-hydroxybutyrate
What is the purpose of the pentose phosphate pathway?
- Pentoses for DNA/RNA synthesis
- NADPH for fat synthesis
2 methods to produce acetyl CoA from fat?
Beta oxidation: Fat - Acetyl CoA in the mitochondria
Pentose-phosphate pathway: Fatty acid - Fatty acetyl CoA - Acetyl CoA
What is the barrier in the plasma membrane called?
Permeability barrier
5 things that receptors recognise
Extracellular matrix, growth factors, hormones, neurotransmitters, proteins
4 roles of complex lipids in the bilayer
- Create a fluid and dynamic environment
- Permeability barrier
- Matrix for protein localisation
- Signal transduction
7 roles of proteins, glycoproteins and glycolipids in the plasma membrane
- Receptor, enzyme and carrier
- Junctions
- Signal transduction
- Links to cytoskeleton and extracellular matrix
What is signal transduction
Causes foreign DNA to be introduced into the cell
2 reasons why the bilayer is asymmetric
2 halves of the bilayer are different
2 halves of the protein inserted are different
How do water soluble substances produce intracellular effects without entering the cell?
They bind to a receptor which then carries out the intracellular signalling cascade
Which isomer decreases the melting point?
The cis isomer
What is the structure of most phospholipids in regards to melting point?
Saturated fatty acid in chain 1
Cis unsaturated fatty acid in chain 2
How can the shape of the protein influence the fluidity of the membrane?
The protein can change shape
5 factors which influence the fluidity of the phospholipid bilayer?
Chain length, charge, cholesterol presence, headgroup size, hydration
What is another word for ‘dual affinity’?
Amphiphatic
What structure do proteins which associate with the membrane have?
Name them
Secondary
Alpha helix or Beta pleated sheet
Second messenger cascade for adrenaline and noradrenaline in muscle cells
Adenylate cyclase - cAMP - Protein kinase A - Phosphorylate kinase - Glucose phosphorylase - Gluconeogenesis
Second messenger cascade for adrenaline and noradrenaline in fat cells
Adenylate cyclase - cAMP - Protein kinase A - Lipase - Lipolysis - Fatty acid release
What is the diffusion rate proportional to in passive diffusion? (aside from concentration gradient)
Hydrophobicity of molecule
Increased hydrophobicity = faster diffusion
What is the rate limiting step of simple diffusion?
Getting the molecule through the hydrophobic part of the bilayer
What water souble molecules can and cannot pass by simple diffusion?
5 e.g.
Uncharged polar molecules (e.g. water, urea, glycerol, glucose and sucrose)
NO IONS
Difference between the direction of transport between carrier and channel proteins
Carrier: Both ways
Channel: One way
How do transporters work?
One substrate binds at a time –> conformational change
Difference between an antiporter and a symptorter?
Antiporter: 2 molecules in opposite directions
Symporter: 2 molecules in the same direction (one down and one against)
What direction will a uniporter move its molecule?
Down its concentration gradient
3 roles of nucleotides
Energy carriers (ATP)
Signalling (cAMP)
Enzyme co-factors (CoA)
What are the different names of nucleotides depending on the number of phosphate groups?
Nucleotide monophosphate, diphosphate, triphosphate
What is the backbone of DNA called?
The sugar-phosphate backbone
What direction do nucleotides read in?
FIVE –> THREE
How many genes does mitochondrial DNA have?
37
Define chromatin
DNA and associated proteins
Percentage of nuclear mass made from chromatin?
80%
Define euchromatin
Single strand of nucleotides
Define heterochromatin
Densely packed chromatin fibre
What is the chromosome scaffold made from?
Super-coiled chromatin fibres associated with non-histone proteins
Define centromere
Point of attachment to the mitotic spindle
Which arm is the long and short part of the chromosome?
Q: LONG
P: SHORT
Define homologous
Same
Define Karyotype
Stereospecific number and shape of chromosomes as seen during metaphase
How do the chromosomes condense?
They condense around the protein scaffold
Define cell cycle
An ordered series of events that leads to the division of a cell into 2 identical daughter cells
What are the 5 stages of the cell cycle and their timings
G0: hours to years G1: 18-30 hours S: 2-10 hours G2: 2-10 hours M: 30-60 minutes
What happens during the G0 stage of the cell cycle?
When does the cell move from G0 to G1?
Resting phase
Moves to G1 when it gets a signal to divide
What 2 things happen during the stage G1?
Proteins made
2nd growth phase
What 4 things happen during prophase?
Chromosomes condense
Nucleoli disperse
Centrosomes separate
Mitotic spindle forms
What 3 things happen during protemetaphase?
Nuclear envelope fragments
Spindle attaches to the centromere
Chromosomes move to the cell centre
What is the equator of the cell called?
Metaphase plate
What 4 things happen during telophase?
Chromosomes uncoil
Nucleoli redevelop and fuse
Spindle is disassembled
Nuclear envelope is reformed
What is the mitotic spindle made from?
2 centrosomes made from microtubules
Define centrosomes
Areas where the spindle forms
Define kinetochore
A complex structure made from proteins which binds to specific DNA sequences
They also help microtubules to attach to the chromosome
2 ways of preventing genetic conditions from occuring
Surgery
Designer baby
2 characteristics of genetic information
Seen/hidden
Significant/non-significant
Define polymorphic
2 or more variants of an allele
Found introns and exons
What are the three types of polymorphism
Single nucleotide polymorphisms
Restriction fragment length polymorphisms
Short tandem repeats
Where in the genome do SNP’s occur?
Introns and exons