biochem exam 1 chap 14 &15 Flashcards
Storage Homopolysaccharides – Starch (Glycogen)
Main storage polysaccharide in animals
* Greatest abundance in liver (100g) and muscle cells (400g)
* Similar in structure to amylopectin, but with more branch points
* Unbranched glucose polymer (α1→4 linkage)
* Branches out every 8-12 residues (glucoses) using α1→6 linkages
* It is more compact. Why?
Glycogen
Not as energy rich as fatty acids, why?
* What are the advantages of glycogen?
* Maintains blood-glucose levels between meals
* Keeps brain supplied with glucose
* Energy for sudden, strenuous activity (fast breakdown) * Energy in the absence of O2
* Helps maintain osmotic balance in cells (remember?)
Glycogen – Why Branching?
- to use polysaccharides as sources of energy, degradative enzymes must degrade polymers into monomers
- these degradative enzymes act only on non-reducing ends
- each branch ends with a non-reducing sugar
- branching makes possible more rapid degradation
Glycogen Synthesis
- Glycogen breakdown and synthesis are controlled primarily by three hormones that, in turn, control several sets of enzymes
these 3 hormones are:
- insulin - there is lots of glucose in the blood and so insulin pushes glucose into the cells so that it can be stored into glycogen for when the body needs energy – indicative of a high energy state
- glucagon (making glycogen gone by it being broken down into glucose) – indicative of a low energy state
- epinephrine - you need quick energy to run away so glycogen is broken down quickly into glucose to be used for energy – indicative of a low energy state
- Insulin (“well-fed” hormone) – favors glycogenesis (what happens to blood glucose?- gets lowered!) - works right after a meal =- insulIN brings glucose in when too much of it is in the bloodstream and this results in a lower blood sugar. It favors glycogenesis because it can use the glucose that you just ate to build more glycogen for when you haven’t eaten in a while
- Glucagon”e” (“hunger” hormone) – favors glycogenolysis (blood glucose?- is raised)- works when you haven’t eaten a while and makes your blood glucose rise because it puts glucose into the blood (right?). Favors glycogenolysis because it will break off the glucose bits off of glycogen to put into your bloodstream
- Epinephrine (“fight-or-flight” hormone) – favors glycogenolysis (why?) because it will be able to break off glucose from glycogen in order to use it for quick energy
Glycogen Synthesis
Enter…UDP-Glucose!
* The biosynthesis of many polysaccharides involves sugar nucleotides
- For the synthesis of glycogen, the intermediate is UDP-glucose
- Why? Energetics of course! Reaction coupling! because this is an anabolic rxn we need ann exergonci rxn to drive this process forward
- The formation of glycosidic linkages is ender or exergonic? - it is endergonic
- So that energy must come from somewhere! Hydrolysis
of UTP→UDP - so the formation of the glycosidic linkages in glycogen is endergonic and so it needs energy to be put in to move forward and that energy is from the hydrolysis of UTP to UDP!
- What is it?
- A high-energy sugar ready to be transferred to an existing glycogen chain or to start the growth of one.
The function of UDP-glucose: starts or adds to the glycogen chain from glycogenin
what is the function of UDP-glucose?
it provides the glucose to a growing glycogen polymer
the final step is essentially irreversible (because it is exergonic)
cells carry out this rxn only when glycogen is to be synthesized
Glycogen Synthesis
- glucose enters a cell and is phosphorylated to glucose-6-phosphate by hexokinase
- glucose-6-phosphate is then converted to glucose-1-phosphate by phosphoglucomutase
- synthesis of UDP-glucose. Glycogen can now be synthesized from UDP-glucose using 3 enzymes:
- glycogenin: an enzyme that generates glycogen. It is the starting point for glycogen synthase to be added to glycogenin
- glycogen synthase: adds to glycogenin
- branching enzymes: used to form the branches of glycogen - initiation of glycogen synthesis via glycogenin (primer and enzyme)
- continuation of synthesis via glycogen synthase
- branch synthesis via branching enzyme
Initiation of Glycogen Synthesis
Glycogenin is the seed that nucleates
glycogen growth. It is a dimer.
Glycogen can’t grow spontaneously, we have to attach glucose molecules to something, and that something is glycogenin
That something is Glycogenin
Here, at least 8 glucose molecules via UDP- glucose, are added to glycogenin
glycogenin is a primer and an enzyme, primer must have at least 8 glucose residues
Continuation of Glycogen Synthesis
Glycogen synthase breaks the phosphodiester linkage of UDP-glucose and forms an α(1→4) glycosidic bond between glucose and the growing glycogen chain at nonreducing ends (OR, H, H, OH) ****go over
Glycogen Branch Synthesis
The branching enzyme removes terminal 6-7 glucose molecules from the nonreducing end and makes the α(1→6) linkages for branches in the glycogen molecule somewhere else
This allows glycogen synthase to add new glucose molecules to the nonreducing end of either branch – faster!
Glycogen Catabolism (Breakdown)
remove monomers sequentially, producing glucose 1-phosphate
debranch, producing glucose
convert glucose 1-phosphate to glucose6-phosphate, happens in muscles when you need energy
in the liver: glc 6-p goes to glucose and maintains blood glucose
the hormones that stimulate glycogen catabolism: glucagon and epinephrine
the hormone that inhibits glucagon catabolism is insulin
also during glycogen sunthesis, G6P is turned into G1P and that G1P is added to glycogen
but during glycogen breakdown G1P is turned back into G6P and that will be able to go into glycolysis for breakdown into pyruvate and energy!
glycogen breakdown w phosphorylase
G 6-P to glucose - happens in the liver to maintain blood sugar
G 6-P to glycolysis - happens in the muscle to be broken down into pyruvate and energy
enzyme for glycogen breakdown: glycogen phosphorylase
enzyme for glycogen synthesis: glycogen synthase
exergonic, regulated, by passes through gluconeogenesis:
1, 3 & 10 you have to know the enzyemes of rxns 1, 3 & 10
general principles of metabolic regulation
extremely important to balance & regulate
- breakdown, yielding usable energy (ex: ATP)
- synthesis, requiring energy
remember: dynamic steady state (equal rates of formation and breakdown)
net effect: homeostasis (constant concentration can be disturbed)
key molecules: the energy molecules
- ATP/ADP/AMP
- NADH/NAD+
- NADPH/NADP+
- acetyl-COA
involved in many rxns, so changes have broad impact
controlling enzyme activity
by changing the # of active enzyme molecules in a cell (slow: second - hours
- synthesis (transcription, translation)
- activation of inactive precursors (proenzymes)
covalent modification (ex: phosphorylation & dephosphorylation; takes second to minutes)
by allosteric effectors (takes milliseconds). - this will be sigmoidal
covalent modification is phosphorylation!!!
factors effecting activity
enzyme:
binds ligand
binds substrate
undergoes phosphorylation
combines with regulatory protein
Additionally (remember?)… we can control reactions by controlling concentrations
recall: delta G is ~constant, but delta G depends on a concentration of metabolites
if the metabolite concentrations = equilibrium concentration, the rxns is near equilibrium so delta G is relatively small: rxn proceeds to a limited extent
the greater the difference between Keq and Q the greater the tendency to proceed so this rxn will be exergonic!!!!!!
if we make the [ ] far from equilibrium the rxn will go
is that why AMP will make energy producing rxns go? yes
AMP is far from equilibrium and so it will make the rxn go forwrad and so it has a negative delta G
ATP is also far from equilibrium but in the right direction so it will make the rxn go backward which we do not want want if we have a lot of energy and so it has a positve delta G probably
So, for example…
the key role of AMP
- as an indicator of metabolic status
its energy state moves very far from equilibrium and thus will drive the rxn forward yes!!!! great job
YOU WILL GET AN A ON THIS EXAM IN JESUS NAME AMEN!
Regulation of Glycolysis & Gluconeogenesis
Goal: Regulate [ATP] (homeostasis)
Regulate the far from equilibrium, exergonic, rate-limiting (irreversible steps)…which are? 1, 3, 10
Steps catalyzed by enzymes, so how do we regulate them?
Usually controlled by allosteric regulators, hormones, and the regulation of [substrate]
Regulation is coordinated…regulate both at the same step
the very largely exergonic and irreversible steps are 1, 3 & 10 and are therefore regulated :)