Week 14 - Unit 4 Flashcards
Proteases are secreted from the exocrine pancreas as ________.
Zymogens - require activation for enzyme function
Before a protein is recycled it has to be ________ by a family of transaminases , which allows the carbon backbone to be used for GNG or energy.
Deaminated
Ammonia released from the process of Deamination of AA is used by the ____ cycle. The cycle occurs in the liver and takes the Ammonia that must transported as _____or ______ and used to synthesize urea as a means of disposing of the ______. Critical cycle as ammonia is toxic to the body.
Urea
Alanine
Glutamine
Nitrogen
In the stomach what two things start to digest proteins?
What will protein be reduced to ?
- HCL(Acid)
- Pepsin (enzyme)\
Polypeptide chains
After the stomach, the Pancreas will secrete what 5 things to cleave the Polypeptides into Di and Tri peptides in the small intestine?
- (HCO3-) -bicarbonate
- TrypsinOGEN
- ChomotrypsinOGEN
- PROelastase
- PROcarboxypeptidases A and B
(Remove capital letters to make active)
All of the enzymes secreted from the pancreas are secreted as ?
Zymogens that must be activated (cleaved to activate)
Di and Tri peptides and free AA are taken up by ______ ______ cells through similar mechanisms as Glucose. It uses ______ _____ transport and SOME_____ transport mechanisms.
Intestinal epithelial (small intestine)
Secondary active
Facilitated
What 2 things can Pepsinogen be activated by and activated to what?
Acid (HCL) or autocatalyzed cleavage
Generates Pepsin
For the enzymes secreted by the pancreas, what will be the first activate enzyme in the cleavage cascade and what is the enzyme that starts the cleavage?
Trypsinogen ———> Trypsin
Enteropeptidase (Enterokinase) will cleave
Active Trypsin will cleave and be the activator for what other 3 Zymogens (proenzymes) secreted by the pancrease for digestion of Bi and Tri -peptides ?
- Chymotrypsinogen———> Chomotrypsin
- Proelastase ——————> Elastase
- Procarboxypeptidases—->Carboxypeptidases
The __________ transporter will generate the ____ gradient by pumping it out to keep concentrations low in the intestinal lumen for secondary active transport of the AA paired to it into the cell.
Sodium-ATPase
Sodium
On the ______ ____ of Intestinal cells, the AA will move into the blood stream through _______ transport.
Serosal side
Facilitated
The (gamma) y-Glutamyl cycle is necessary for the synthesis of _______.
Glutathione - required to maintain reduced state of Iron in RBC
In Step one of y-Glutamyl Cycle, the y-glutamyl transpeptidase (in membranse) will conjugate an AA to generate _________ on the inside of the cell.
y-Glutamylamino acid
In step two, of y-Glutamyl cycle, the y-Glutamylamino acid will release the _____ and continue cycle to create_____.
AA
Glutathione
Many cells have the inner cell pathway to produce Glutathione, but few cells have the ________ ______. So it does not play a large role in AA uptake.
y-Glutamyl transpeptidase
There are two major pathways for protein recycling in the cell, what are they?
- Lysosomal degradation due to Autophagy
2. Protein ubiquinination and protosomal degradation
In autophagy/lysosomal degradation in the cell, it involves ______ and the molecular intermediate ______.
AMP-kinase (AMPK)
mTOR
Under low energy when AMP is high and ATP is low, the signal of this condition will activate _______. This will lead to the phosphorylation (activation) of the complex ________ _____ ______ .
AMP-kinase
Tuberous sclerosis complex 1 and 2 (TSC1/2)
When TSC1/2 is phosphorylated and activated by AMP-kinase, then it will activate the GTPase activity of the small protein ______. The GTPase activity will convert it to the _______ which inactivates itself.
Rheb (Rheb-GTPase)
Rheb-GDP
Inactivation of Rheb (now as Rheb GDP), will inactivate ______ which then releases the inhibition that _____ was putting on _______.
mTOR
mTOR
Autophagy (now lysosomes can degragate and recycle proteins)
When Rheb is inactive, what is also then inactivated?
mTOR (Rheb no longer available to activate mTOR)
(Autophagy pathway) When energy is high in the cell , in the form of insulin, that will phosphorylate _______ at an alternative site(this will be inhibition), then leading to ____ _____ activity.
TSC1/2
Rheb - GTP
During the autophagy pathway, when there is Rheb-GTP activity, this will activate ______ which will inhibit process of _______ and inhibit recycling so thereby increasing protein ______. This process controls protein synthesis vs. degradation and which will occur.
mTOR
Autophagy
synthesis
When insulin is present (high energy) , fill in the blanks for the Autophagy pathway?
Insulin—-> ____ TSC1—–>____Rheb—>____mTOR
Inhibits (TSC1)
Activates (Rheb)
Activates (mTOR)
Ubiquitin is a small protein of appx. ____ AA. It can be added to the amino group in _______ resides of proteins that cells want to degrade. Targets the protein.
76
Lysine
The proteasome complex used in Ubiquitination protein degradation will involve a ______ proteasome subunit and a _____ regulatory particle.
20S
19S
The _____ regulatory peptide particle will bind on top of the _____ proteasome (cylinder shape) complex. They will form a ____ complex that requires _____ energy for combination.
19S
20S
26S
ATP
The movement of the polypeptide into the proteasome for degradation will require ____. Once the Polypeptide is digested, the ____ are released into the cytosol and can be used for ______ or _____ in the cell.
ATP
AA
Protein synthesis
Energy
What AA will help rapidy turn over and target Polypeptides into proteasome complexes?
- Proline
- Glutamate
- Serine
- Threonine
The AA Proline, Glutamate, Serine, and Threonine will form a _______ domain, and that will target proteins carrying such domains for ubiquitination and rapid turn over in cell.
PEST
True or False:
The 20S proteasome can have only one 19S regulatory particle associated with it.
False - it can have two- one on top and one on bottom
Besides the digestive proteases, what are the main 6 proteases involved in protein turnover/degradation?
- Cathepsins
- Caspases
- Matrix Metalloproteinases
- Proteasome (ubiquitin-tagged proteins)
- Serine Proteases
- Calpains
_____ will use the mechanism of cysteine proteases and play a role in Lysosomal enzymes for protein turnover/degradation.
Cathepsins
______ will use the mechanism of Cysteine proteases and cleave after aspartate and play a role in Apoptosis
Caspases
______ _______ require zinc for catalysis and are used as proteases for ____ ____.
Matrix Metalloproteinases
Matrix degradation
Diseases can be caused by deficencies in the facilitated membrane transport proteins such as ______ and ______.
Cystinuria (cystine uptake affected- kidney stones)
Hartnup Disease (Trasporter B- for neutral AA is impaired, pellagra-like symptoms due to lack to tryptophan)
______ disease is not due to problems in transporters or (genetic reasons) turnover, but rather due to environmental causes- protein calorie malnutrition- leading to excessive protein degradation in extremites and edema.
Kwashiorkior
Cystic Fibrosis (genetic) impacts digestion due to a deficiency in a ____ transporter in the pancreas. This impacts the water balance in the pancreas which causes what?
Chloride
Problems in secretion of diegestive enzymes from pancreas - so problems in normal nutrient degradation and absorption (protein)
In Cystic Fibrosis the secretion of enzymes from the pancreas will be ______ and not as _____ due to the problems in water balance. This makes the enzymes less effective in digestion.
mucous-y
fluid
What are the four main diseases or disorders covered that can cause protein turnover/degradation issues?
- Cystic fibrosis (genetic)
- Cystinuria (genetic)
- Kwashiorkor (Enviornmental)
- Hartnup Disease (Genetic)
In the body, excess AA will have its _____ taken and used for Storage or energy, and it will have the _____ taken for the ____ cycle or to create ______.
Carbon
Nitrogen
Urea, Aspartate
The Urea cycle is for detoxifying Ammonium ions (NH4) and incoporating them into Urea as ______.
NH2
Ammonium ions (NH4) are the most prevelent in the body as the pKa is _____. Such that the ______form is the most common molecule. However ____ ______ can also be found and is essential for disposal of protons in kidney.
9.3
Protonated
Free Ammonia
In the Urea cycle it can be activated in both the ____ and _____ state. It is a function of the excess of ____ in the body.
Fed
Fasted
AA
In the fed state for the Urea cycle, the free ammonium ion can be used in the _____ cycle, the carbon can be used to make _____ or _______ or ____.
Urea
Glucose
Triacylglycerols
Protein synthesis
In the Fasting state for Urea cycle, GNG is occuring and the primary substrate for GNG from the skeletal muscle is ______. The AA are then taken to the liver and ______ and the Ammonium ion is used to generate Urea.
Alanine (other AA too)
Deaminated
The movement of Ammonia(NH3) in the urea cycle requires _______ reactions that require the co-factor _____.
Transamination
PLP (pyroxidylphosphate)
In the Transamination reaction, the substrates Aspartate and Alpha-KeoGlutarate will react , with _______ present, and then the (NH3) Ammonia will transfer to the Alpha-keto Glutarate to make _______ and the Aspartate will turn into its conjugate_________. These reactions are reversible.
PLP (pyroxidylphosphate)
Glutamate (new AA)
Oxaloacetate (keto acid of Aspartate)
There are several pathways that shuttle into the generation of Ammonium (NH4). ______ and ______ have several amides in their structure and when catalyzed they will release free ammonia.
Glutamine
Asparagine