Viruses 2 Flashcards

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1
Q

importance of viruses of prokaryotes

A

they can be used to kill bacteria - bacteriophages

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2
Q

genome of viruses of prokaryotes

A

majority are double stranded

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3
Q

how do we detect viruses

A

biochemical (enzymatic assays and PCR and NA hybridization), serological (IF, IP, IB, ELISA, RIA), electron microscopy

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4
Q

do you detect viruses and virions the same way

A

no

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5
Q

how do you estimate how well virion are doing

A

if it makes 1% of what it is supposed to make - quantity over quality

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6
Q

what are plaque assays based on

A

based on CPEs (growth lacking where they grow)

used in bacterial cells to demonstrate viable phage numbers, used to detect total virions in mammalian cells, viral particles must be viable

point here is that it is only used to detect virions which are viable viruses

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7
Q

how are viruses used as tools?

A

• Molecular and cellular biology
– Manipulate systems to investigate function of cells
• Genetics
– Have contributed to understanding of DNA replication, transcription, translation, transport
• Gene therapy
• Immunology
– Understanding our immune system

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8
Q

do viruses have protein synthesis machinery and division by binary fission

A

no – they use host’s machinery system

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9
Q

where does protein synthesis for virus occur

A

in the cytoplasm of the host cell

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10
Q

what are virioids and where are they usually found

A

infectious, subviral particles

found in plant diseases

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11
Q

type of genome in viroids

A

small circular single stranded DNA

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12
Q

do viroids encode protein

A

no but they replicate autonomously

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13
Q

what are pseudovirons

A

they contain non viral DNA but are infectious and do not replicate

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14
Q

what are defective virus/satellites

A

they are viral kind of viruses that cannot encode capsid protein so they depend on helper viruses for their propagation(replicating), ssRNA, and DNA

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15
Q

example of a defective virus

A

Hep D

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16
Q

what does Hep D (delta agent) use as its helper

A

Hep B

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17
Q

why is Hep D considered “viroid-like”

A

because it does code for its own protein

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18
Q

are prions viruses

A

no

19
Q

properties of prions

A

proteinaceous and infectious but no NA

20
Q

where do virophages grow

A

only in a strain of the mimivirus within the infected amoeba – that can infect us

21
Q

what is the first virophage discovered and describe it

A

sputnik: an 18 Kb circular double-stranded DNA, icosahedral virus

22
Q

what do virus need to do to propagate (to replicate)

A

– Infect an appropriate host cell
– Use the host cell to generate more of itself
– Get out of the host cell to do it all over again

23
Q

what are the phases of viral life cycle

A
  • Eclipse phase - infectious virus cannot be seen or recovered from infected cells
  • Maturation (there is a lot of it)
  • Latent phase - progeny virus accumulates intracellularly but it hasn’t been released yet - ends when free virus is released
24
Q

when does latent period end

A

when it becomes extracellular aka when the free virus is released

25
Q

what are the five main stages of virus life

A

1) attachment (adsorption)
2) penetration (injection)
3) protein and nucleic acid synthesis
4) assembly and packaging
5) virion release

26
Q

in the influenza virus, where does transcription and replication occur

A

nucleus

27
Q

how does influenza virus get its envelope

A

by budding out of the cell after its assembly

28
Q

what type of mechanism occurs in adsorption/attachment stage of virus life cycle

A

specific and non specific

29
Q

what is the difference between susceptibility and permissibility

A

susceptibility - does the cell have the receptor required for the VAP (viral attachment protein) to attach so that the virus can get into the cell

permissibility - does the cell have the machinery needed for the virus to be able to replicate

30
Q

what determine susceptibility and what are these structures made of

A

receptors - made of protein, carb, or lipid

31
Q

what determines host range

A

interaction

32
Q

is there just one way for a virus to enter the cell

A

no there are multiple portals of entry

33
Q

how do enveloped viruses penetrate into the cell

A
  • Endocytosis -> 􏰀fusion with cellular vacuoles
  • Fusion of viral membrane with cellular plasma membrane (fusion mediated by specific viral protein)
  • Other mechanisms
34
Q

how do non enveloped viruses penetrate into the cell

A
  • adsorptive endocytosis

* other ill-defined pathways

35
Q

what does it mean for the virus to uncoat once it enters the cell

A

releases viral genome for functional expression

36
Q

is a cell susceptible and/or permissible once it gets to the protein and nucleic acid synthesis

A
  • cell is susceptible because virus was able to get into it

- if cell has the ability to make protein and nucleic acid for the virus then it is permissible

37
Q

what happens in the protein and nucleic acid synthesis stage of viral life cycle

A

the virus uncoats so it takes off its capsid to expose the nucleic acid so that it can replicate and then enters the eclipse phase

38
Q

can the infectious particle be recovered once the virus has entered the protein and nucleic acid synthesis phase

A

no

39
Q

what happens in the assembly and packaging step of viral life cycle

A

new viral particles are assembled with the preformed viral particles (in cytoplasm or nucleus)

then in enveloped viruses: viral proteins associate w/ cellular membranes, aggregate in patches –> organize –> 􏰀bud from cell

40
Q

can maturation occur after initial assembly

A

yes – they can even occur after virion are released

41
Q

when does capsid assembly and encapsidation occur

A

late steps of replication cycle

42
Q

what are way in which viruses can be released

A

budding, cell lysis, poke cells in cell membrane

43
Q

difference between structural and non structural

A

structural - all proteins in mature virus particle

non structural - viral proteins in cell but not packaged

44
Q

how can one cultivate virus seeing that they cannot be grown on an agar plate

A

– susceptible organisms
– cell culture (10 and transformed cells)
– embryonated chicken eggs
– organotypic raft cultures (growing skin in an incubator)