Review 6 Flashcards
VIRAL Genetic Material
May be linear or circular DNA or RNA
Packaging DNA Supercoil in Prokaryotes
DNA GYRASE uses ATP to twist circular molecule into a supercoil
DEGENERATIVE CODE
More than one series of three nucleotides that code for an amino acid
UNAMBIGUOUS CODE
Any three nucleotides will code for one and only one amino acid
UNIVERSAL CODE
Almost every living organism uses the same code
Primer
A Primer is a small chain of RNA produced by RNA Polymerase called PRIMASE
Helicase
Unwinds the double helix separating two strands
Replisomes
BI-DIRECTIONAL replisomes proceed in BOTH directions
Topoisomerase
Cut one or both of the strands and unwrap the helix, releasing the excess tension
a. when helicase unwinds the helix at the origin, DNA gets wound more tightly upstream and downstream
Types of Prokaryotes Polymerase
- Pol 3 - Fast accurate elongation of the leading strand and Proofreading 3’ to 5; exonuclease activity correct mistakes by removing incorrect nucleotides
- Pol 2 - unknown
- Pol 1 - Removes primer and replaces it with DNA
Removal of RNA primers in prokaryotes and Eukaryotes
Prokaryotes - Pol 1
Eukaryotes - RNase H
Deletions
When a portion of a chromosome breaks off
Duplications
DNA fragments break free from one chromosome and incorporate into another
Aneuploidy
When a chromosome is copied
Polyploidy
When entire sets of chromosomes are copies
Translocation
Segment of DNA from one chromosome is inserted into another chromosomes
Transposons: excise themselves from a chromosome and reinsert themselves at another location
Proofreading
DNA polymerase checks its work and excises incorrectly matched bases.
daughter strand is identified by its lack of methylation and corrected accordingly.
Mismatch Repair
Occurs during the G2 phase of the cell cycle, using the genes MSH2 and MLH1.
Nucleotide Excision Repair
Fixes helix-deforming lesions of DNA (such as thymine dimers) via a cut-and-patch process that requires an excision ENDONUCLEASE
Base Excision Repair
Nondeforming lesions of the DNA helix (such as cytosine deamination) by removing the base, leaving an apurinic/apyrimidinic (AP) site.
AP EXONUCLEASE then removes the damaged sequence, which can be filled in with the correct bases
CONSENSUS SEQUENCE
Variations from the consensus sequence cause RNA polymerase to bind LESS tightly and LESS often to a given promoter causing the gene to be transcribed LESS
RNA Polymerase
- Pol 1 - rRNA
- Pol 2 - mRNA
- Pol 3 - tRNA