Proteins and their synthesis Flashcards

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1
Q

What is translation?

A

The generation of specific proteins from their mRNA templates

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2
Q

What 2 things does translation involve?

A

Ribosomal proteins and Functional RNAs

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3
Q

What are the two functional RNAs

A

tRNAs
rRNAs

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4
Q

What is the the relationship between transcription and translation in Eukaryotes?

A

It occurs in separate compartments in eukaryotes

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5
Q

What is the relationship between transcription and translation in prokaryotes?

A

It occurs in the same compartment in prokaryotes

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6
Q

How many amino acids are there in genetic code?

A

20

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7
Q

What is released each time a peptide bond forms?

A

Water molecule

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8
Q

What are the ends of a polypeptide chain called?

A

N-terminal and C-terminal

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9
Q

What are the 3 parts of a ribosome?

A

Large subunit
Small subunit
decoding center

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10
Q

What are the 4 levels of protein structure?

A

Primary
Secondary
Tertiary
Quaternary

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11
Q

Secondary structure explanation?
What are the two conformations?

A

Local structure
Helices
Beta pleated sheet

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12
Q

Tertiary structure explanation?

A

Composite of all secondary structures

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13
Q

Protein structure is relatred to its function.
Globular-
Linear-
Disordered

A

Globular - antibodies
Linear - skin
Disordered -

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14
Q

Protein structure is relatred to its function.
Globular-
Linear-
Disordered

A

Globular - antibodies
Linear - skin
Disordered -

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15
Q

How are amino acids specified?

A

By nonoverlapping codons containing 3 adjacent nucleotides

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16
Q

What did the experiments of Crick, Brenner and others indicate?

A

Using the T4 phage, they indicated that the genetic code involved triplets

17
Q

In the 1960s, Nirenberg, Matthaei, and Khorana

A

Used synthetic RNAs to crack the genetic code

18
Q

What is degeneracy?

A

Multiple sets of codons can code for the same thing
Some mutations wont change what result the codon codes for

19
Q

What can single nucleotide mutations cause?

A

They can introduce premature stop codons which break the gene

20
Q

What do tRNAs do?

A

They bring amino acids to the ribosome so it can be added to a polypeptide chain

21
Q

What 2 things do tRNA sceondary structures have?

A

Anticodons and Amino Acid attachment sites

22
Q

What does the tRNA anticodon region do?

A

Binds with a codon for addition to a polypeptide chain

23
Q

What do aminoacyl-tRNA synthetases do?

A

Covalently attach appropriate tRNAs and amino acids
tRNAs and AAs dock inside and AAs are bound

24
Q

What makes it possible for tRNAs to recognize multiple codons

A

Wobble effect

25
Q

What is special about Inosine?

A

Inosine can sometimes replace A and it can pair with A,C, or U

26
Q

Are prokaryotic or eukaryotic ribosomal subunits larger?

A

Eukaryotic

27
Q

What feature of bacterial (prokaryotes) mRNAs helps position the ribosome during translation inition?

A

Shine-Dalgarno sequence

28
Q

What are the three key sites that ribosomes have to facilitate interactions with molecules necessary for translation?

A

Acceptor
Polypeptide
Exit

29
Q

What role does the start codon play in initiating translation?

A

It marks the site at which translation into protein sequence begins and facilitates position of ribosome docking

30
Q

What do the stop codons trigger?

A

Stop codons recruit release factors which trigger termination of translation and trigger disassembly of ribosome

31
Q

What are the 3 stages/phases of translation?

A

Initiation
Elongation
Termination

32
Q

What proteins are involved in elongation?

A

Elongation factors, they allow the ribosome to shift during translation extending the polypeptide chain

33
Q

If prokaryotes have the Shine-Dalgarno sequence, what is the eukaryote version?

A

5’ cap

34
Q

How does the ribosome dock in eukaryotes

A

Docking in eukaryotes is facilitated relative to the start codon and 5’ cap

35
Q

What allows the large ribosomal subunit to bind to the small unit in prokaryotes?

A

F-met

36
Q

What are nonsense supressors?

A

Secondary mutations that enable translation to proceed through a premature stop

37
Q

What are post-translational modifications?

A

Additional levels of modifications to the protein that influence how they function

38
Q

What are 5 examples of PTMs?

A
  1. Addition of chemical groups
  2. Amino acid modifications
  3. Cleavage
  4. Addition of complex molecules
  5. Addition of polypeptides