Prokaryotic Translation Flashcards
What is the first amino acid added?
N-formylmethionine or fMET
first amino acid inserted by
methionyl-tRNAfMET
Regular methionyl-tRNAmet is used for the elongation of the polypeptide chain can only bind to
A site
How does a ribosome know where to start translation on an mRNA?
mRNA contains a ribosomal RNA binding sequence… Shine Dalgarno sequence
– base pairs with the 16s rRNA of the small subunit
Shine Dalgarno sequence
Ribosomes are large RNA-protein complexes
composed of two subunits.
10^3 kDa
prokaryotes 50S and 30S subunits associate to form a
70s ribosome
– measurement of mass based on density
gradient centrifugation
Svedberg units
Each – of the ribosome is composed of a set of proteins complexed
with one or more rRNAs
subunit
Has multiple Ribosome-binding sites (Shine Dalgarno sequences) so multiple polypeptides can be synthesized –
simultaneously and independently
Initiation Factor – binds to 30S subunit to prevent 50S from binding
IF3
– helps entry of initial methionyl-tRNAfmet
IF3 & IF1
– (GTP-binding protein) binds to the P site and is required for attachment of first aa- tRNA
IF2
16S of the small subunit recognize – and binds to mRNA at AUG
Shine- Dalgarno sequence
Initiator methionyl-tRNAfMet binds to the start codon AUG at –
P site and IF2
When IF3 is release…
50s binds to 30s
At the end of initiation,
GTP is hydrolyzed and IF2-GDP and IF1 are released
– brings in each new aminoacyl-tRNA to the A site”
EF-Tu-GTP
Aminoacyl-tRNA binds to 2nd codon at –
A site
Peptide bond is form between the 2 aa by
Peptidyl transferase is rRNA from 50S
– drives the translocation step with hydrolysis of GTP”
EF-G-GTP
RF1 recognizes –.
UAG and UAA stop codons
RF2 recognizes –
UGA and UAA stop codons
both release factors require
GTPase RF3
After binding of RF1 or 2 with RF3-GTP into the A site
- The new polypeptide is cleaved from the last tRNA.
2. GTP is hydrolyzed, the subunits are separated
In bacteria, ribosomes begin translating mRNA while –
the mRNA is being synthesized
Several ribosomes can translate one mRNA –
simultaneously