Prokaryotes Flashcards

1
Q

When were archaea discovered?

A

1970s with RNA sequence data

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2
Q

What’s the most importatnt difference between Bacteria and Archaea?

A

Bacteria have peptidoglycan in cell wall, but Archaea don’t

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3
Q

Prokaryotic cell structure

A
  • unicellular

- no nucleus or membrane bound organelles

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4
Q

Bacterial cell wall

A
  • G+ has thick peptidoglycan

- G- has thin peptidoglycan and outer lipopolysacchride membrane

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5
Q

Bacterial flagella

A
  • different from other flagella

- circular motor spins

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6
Q

Spirochetes

A
  • Have internal flagellum (axial filament) that runs between cytoplamic and outer membrane
  • mostly free living and anaerobic
  • some are pathogens (syphilis and lymes)
  • chemoheterotrophic
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7
Q

Chlamydias

A
  • live only as intracellular parasites
  • aerobic
  • G- cocci
  • one of the smallest prokaryotes
  • small genome : 1-1.3 megabases
  • Elementary Bodies are infective and Reticulate bodies replicate in cells
  • very little peptidoglycan –> don’t stain, but are still sensitive to penecilin
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8
Q

Hyperthermophilic Bacteria and Hadobacteria

A
  • G- and sometimes high GC content
  • not monophyletic
  • best above 80C some can survive above 122C
  • Aquifex = chemoautotrophs living in volcanic vents and hot springs (similar to archaea)
  • Deinococcus = resistant to radiation –> used in bioremediation of toxic waste sites
  • Thermus aquaticus = sourse of DNA polymerase used in thermocyclers (TAQ)
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9
Q

Actinobacteria

A
  • Filamentous (fungi like)
  • Not all have high GC content
  • Streptomyces are sources of antibiotics
  • Myobacterium tuberculosis and M. Leprae
  • Typically G+ and non spore forming
  • some have mycolic acid
  • important decomposers in soil
  • mostly aerobic
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10
Q

Firmicutes

A

-Includes Bacilli (aerobic) and Clostridium (not)
-Gram positive
Staphylococcus and Streptococcus
-Heliobacteria = anaerobic, photoheterotrophic N-fixers

-Mycoplasmas = tiny obligate parasite with no cell wall because it can’t make peptidoglycan –> steals sterols from host for membrane

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11
Q

Cyanobacteria

A
  • Most diverse and ecologically successful group of bacteria
  • exists in all terrestrial and aquatic habitats
  • big, multi-shaped, G+
  • Blue bc of pigments (phycocyanin)
  • uses chloryphyll a
  • some fix nitrogen
  • ancestor of chloroplast
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12
Q

Proteobacteria

A
  • Gram negative
  • Super diverse (like proteus)
  • N-fixing soil bacteria
  • usually anaerobic
  • alpha proteobacteria = mitochondria origin
  • ancestor was probably photoautotrophic
  • tons of human pathogens

Photoautotrophic purple bacteria + relatives are anoxygenic and anaerobic and they use bacteriochlorophyllls instead of chlorophyll a

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13
Q

Other bacteria phylum

A
bacteriodetes
synergistetes
chrysiogenetes
thermodesulfobacteria
fusobacteria
acidobacteria
deferribacters
thermotogae
nitrospirae
chloroflexi
dictyglomi
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14
Q

When/who discovered archaea

A

1970s Carl Woese

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15
Q

Do archaea form spores?

A

no

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16
Q

Lipid of archeae

A

L-glycerol phospholipids in backbone
ether-linked and branched isoprenoid side chains
stabler than bacteria

17
Q

What forms of eating can archaea do?

A
  • photoheterotroph, chemoheterotroph, and chemoautotroph

- NOT PHOTOAUTOTROPH

18
Q

Describe archaea flagella.

Is it similar to the bacterial?

A
  • not homologous

- thinner, solid, and powered by ATPase

19
Q

T/F all archaea are extremophiles

A

-false… they can be found in all habitats

20
Q

Many archaea are infected by host specific viruses. What does this imply about evolution?

A

-The emergence of certain virus groups preceeded the split of archaea from bacteria

21
Q

Are archaea the only ones who can perform methanogenesis?

A

yes

22
Q

Four superphyla of archaea

A
  • euryarchaeota
  • TACK
  • DPANN
  • Asgard
23
Q

What were the original two superphyla of archaea

A

-euryarchaeota and Crenarchaeota

24
Q

Euryarchaeota

A
  • Methanogens, halophiles, and thermophiles
  • some halophiles can use light energy to synthesize ATP
  • Halobacterium salinarium
25
Q

Crenarchaeota

A
  • Part of TACK phyla
  • many are strict anaerobes
  • usually hyperthermophilic or acidophilic
  • seen at Yellowstone or in deep sea volcanoes
  • Chemoheterophs or chemoautotrophs
  • Important genera = Sulfolobus and Thermoproteus
26
Q

DPANN

A
  • Many are small with little genomes
  • many are symbiotic

Nanoarchaeum equitans

  • obligate symbiont of Ignicoccus (archaea)
  • takes lipids from host bc can’t make AA, fats, or nucleotides
  • smallest known genome
  • originally its own phylum bc Nanoarchaeum equtans was discovered in thermal icland vents
27
Q

Asgard

A

Lokiarchaeotes

  • discovered near hydrothermal vents in arctic ocean 2015
  • genome has genes and functions previously thought to be unique to eukaryotes
  • more closely related to Eukaryotes than to any prokaryote
28
Q

Viruses

A
  • part of Tree of Life
  • Derived from cellular life forms, but not alive
  • Probably evolved in all groups of organisms
  • Reconstructing origins phylogenetically is hard
  • constantly changing and adapting