midterm 1 vocab Flashcards

1
Q

what are the steps to the scientific method?

A

observation, hypothesis, measurements, results, conclusion (accept)

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2
Q

goal of stats

A

make strongest conclusion possible with limited information

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3
Q

2 main uses of stats

A

estimation (descriptive) and hypothesis testing (inferential)

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4
Q

population

A

total “universe” of all possible observations

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5
Q

sample

A

set of characteristics that make up subset of the population

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6
Q

variables

A

characteristics of individuals (age, color, etc.)

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7
Q

data

A

measurements of variables made on a sample (yellow/purple, male/female, etc.)

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8
Q

types of variables

A

numerical/quantitative or categorical/qualitative

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9
Q

types of numerical observations

A

continuous (range) or discrete (only select data values, counting)

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10
Q

types of qualitative data

A

nominal (no order) or ordinal (ordered)

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11
Q

what determines the type of stats test used?

A

type of variables and number of treatments

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12
Q

4 reasons why the sample can differ from the population

A

imprecision error (tools/tech), biological variability, mistakes (user error), non-representative data (bias)

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13
Q

bias

A

systemic differences between sample estimations and true population characteristics

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14
Q

random

A

every individual has an equal and independent chance of being selected for sample

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15
Q

purpose of random sampling

A

reduce bias and spread experimental error over all observations/treatments

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16
Q

types of bias

A

order, seasonal (only observing during a certain time of year), observer (Menke is a better evology info observer)

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17
Q

descriptive stats

A

describing a population based on sample data

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18
Q

what does descriptive stats measure?

A

central tendency (mean, median, mode) and spread (SD, variance, range)

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19
Q

what makes a good hypothesis?

A

identification of dependent and independent variables and is testable (can be run through tests) and falsifiable (can be proven wrong)

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20
Q

independent variable

A

predictor or explanatory, causes a response

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21
Q

dependent variable

A

response, the effect one is interested in

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22
Q

what does hypothesis testing do?

A

compare means while considering spread and sample size

calculates the probability of observing the results assuming the null hypothesis is true

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23
Q

what does the p-value represent?

A

probability

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24
Q

when can we reject the null hypothesis?

A

when the p value is less than 5%

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25
t-tests are for testing __ categories
2
26
ANOVA tests are for testing __ categories
3 or more
27
what are mechanisms for evolution (changes in allele frequency)?
natural selection, sexual selection, mutations, genetic drift, bottlenecks, and founder effects
28
what are founder effects?
when a small colony of the original population becomes its own separate population, leading to a reduced amount of genetic variation bc the group is small (violates "large" HW) not adaptation!
29
what are bottlenecks?
a population's size is reduced for one or more generations, leading to reduced genetic variation (violates "leaving" HW) not adaptation!
30
what is genetic drift?
the random occurrence of shifts in allele frequency over time not adaptation!
31
what is gene flow?
movement of individuals to/from a population (violates "leaving/coming" HW)
32
what is natural selection
mechanism of evolution that promotes adaptation for biological fitness (violates "advantageous genotypes" HW)
33
what are mutations?
where genetic variation comes from! random changes in genetic material
34
what is a species?
individuals who can interbreed
35
population
individuals in the same location that can interact and interbreed
36
what is the result of evolution?
genotype and environment -> development of phenotype
37
what is an allele?
multiple forms of a given gene that result in the production of different forms of a protein specified by that gene
38
A POPULATION IN HW EQ. IS NOT _____!!
EVOLVING
39
why do we use HW if it never really occurs?
it can serve as a null hypothesis in evolution studies and is an approximate mathematical model
40
natural selection acts on ___
populations! changes in individuals over time as a population
41
effects of evolution are seen in ___
populations and species
42
evolution does not necessarily lead to ___
adaptation evolution isn't purposeful
43
microevolution
changes in allele frequency within a population
44
macroevolution
large evolutionary changes beyond the formation of a new species (origin of mammals)
45
when does natural selection occur?
when there is variability that is heritable and that influences fitness
46
scientific theory
body of statements that is strongly supported by all evidence we know of and explains some aspect of nature
47
ecology
the study of interactions between organisms and their physical and living environment
48
proximate factors
direct cause of a biological process/phenomenon
49
ultimate factors
deeper cause of a phenomenon that explains when it occurs
50
organismal level
level in hierarchy of biology pertaining to the individual
51
population ecology
study of the interactions between a group of individuals of a given species and their environment
52
ecological community
a group of coexisting species
53
ecosystem
all the biotic and abiotic components of a community
54
biosphere/ecosphere
all ecosystems on Earth
55
biotic
biological factors predation or competition
56
abiotic
physical factors temperature or pH
57
environmental science
the study of humans' impact on the environment
58
adaptation
a trait or characteristic that increases a individual's fitness in a specific environment
59
evolutionary fitness
an individual's ability to survive and reproduce as determined by its characteristics
60
selection pressure
biotic and abiotic environmental factors that determine fitness
61
homeostasis
regulatory mechanisms that help an organism stay within a given set of biological parameters/limits
62
who can have fitness?
individuals
63
predictions
a result or observation that we can expect if the hypothesis is true
64
falsifiable
trait of a good hypothesis that allows for data/observation to prove it is incorrect
65
adaptations are ___ created
evolutionarily
66
what did Darwin establish?
natural selection as a mechanism for evolution via adaptation to promote evolutionary fitness
67
natural selection occurs to...
populations NOT INDIVIDUALS!
68
p = ___ allele
dominant
69
q = ___ allele
recessive
70
evolution
changes in allele frequency
71
HW equilibrium (math)
p^2 + 2pq + q^2 = 1.0
72
when is HW equilibrium applicable?
when no mutations or gene flow occur, the population is infinitely large and randomly mating, and there are no advantageous genotypes
73
genetic drift
random change in allele frequency
74
gene flow
net movement of alleles because of individuals' movement in/out
75
s
selection coefficient, proportion of a specific genotype not represented in the next generation
76
directional stability
favoring one side of the phenotypic bell curve one extreme trait
77
stabilizing selection
intermediate trait is favored in phenotypic bell curve
78
disruptive selection
favoring extreme traits over intermediate ones
79
evolutionary trade-offs
when a given characteristic has fitness advantages, but also costs think of colors and reflectance of guppies
80
why is genetic drift not darwinian?
occurs by chance, not because of natural selection
81
chronic genetic drift can lead to ...
allele loss and/or fixedness
82
gene flow can do what to natural selection?
promote or slow the process incoming/outgoing individuals alter allele frequencies
83
phenotypic plasticity
ability of organisms to present different phenotypes in different environments
84
heritability
cause of phenotypic variation because of genetic differences between individuals
85
rate of evolution is determined by ...
changes in character over time
86
strong selective pressures can lead to ___ and eventually ___
more distinct local changes in species and an ecotype
87
ecotype
genetically distinct population that has adapted to a local environment
88
limits of natural selection
physical and chemical limitations (like size)
89
evolutionary landscape
3D model of fitness and particular genotypes that identify best genotypes for evolutionary fitness by tallest peaks
90
example of organisms with sex roles reversed
jacanas or seahorse male incubates egg (more energetically invested), females compete and are more aggressive
91
sexual selection occurs when:
there's a heritable variation of a trait that influences mating success or fertilization success
92
which sex often experiences stronger sexual selection?
the competing sex logic: non-competing sex can get with whoever they want, but competing one is limited. there's more selective pressure on the limited one to pass on genes
93
elaborate traits usually occur in the ___ sex
competing
94
sexual selection can occur:
before or during/after sex intrasexually or intersexually
95
example of intrasexual selection before mating
mooses male-male or female-female competition for access
96
example of intersexual selection before sex
peacocks display by competing sex for mating choice by non-competing sex
97
example of intrasexual selection d/a sex
frogs compete to have their sperm fertilize egg
98
example of intersexual selection d/a sex
"cryptic mate choice" female chicken can choose which sperm fertilizes their egg after sex
99
intrasexual selection
individuals within a sex compete DIRECTLY for access to mates and their gametes
100
examples of evolution of traits for intrasexual selection
weaponry, fast sperm, sexual size dimorphism
101
sexual size dimorphism
competing sex is larger
102
intersexual selection
indirect competition for access to mates and their gametes
103
what traits can help intersexually selecting organisms win access to mates?
mating displays and signals, courtship behavior, or genitalia
104
sexual selection is the result of:
direct or indirect competition for mates
105
benefits of sexual reproduction must ___ ___ ___
overcome non-trivial costs pros of only passing on 1/2 of genetic material must be better than the cons of potentially risking survival think: color of guppies finding balance between mating visibility and predation avoidance
106
sexual selection often results in traits that ___ natural selection
oppose
107
where does natural variation come from?
mutations!
108
process of including mutation in population
created, generates alleles, natural selection hopefully favors it, adaptive trait selected
109
selection ___ ___ ___
edits existing variation
110
genes are:
composed of DNA and specify how to build proteins
111
what are mutations caused by?
DNA copying errors, chemicals, or ionizing radiation
112
what is important about ionizing radiation?
can't reach gametes
113
frequencies of mutation can change due to:
meiosis/recombination, natural selection, genetic drift, or gene flow
114
mechanisms that DECREASE variation
stabilizing selection, inbreeding, and genetic drift
115
"silent" or "synonymous" mutations
don't change the amino acid
116
"nonsynonymous" mutations
change amino acids and potentially the function of the following protein, can then be acted upon by NS
117
what are the structural mutations that can occur?
deletion, duplication, inversion, fission, or fusion
118
mutation rates are very low! so...
mutations likely won't change allele frequencies in one generation
119
recombination during meiosis can ...
exchange maternal and paternal chromosomes to produce new combinations more rapidly
120
what is the molecular clock?
Kimura's theory that most mutations are neutral we accumulate mutations constantly and we can use that to date how long ago different populations diverged a lot of DNA isn't used much (has since been disproven) and mutations of thrid codon don't always have an impact
121
phenotypic plasticity
a change in an individual's PHENOTYPE in response to their environment
122
natural selection example:
soapberry bugs introduction of new host plants with different fruit sized, bugs shifted hosts NS resulted in beak adaptation to reach seed
123
what are the types of selection?
directional, disruptive, and stabilizing
124
example of directional stabilization
darwin's finches in the drought favored large beaks to open harder seeds
125
example of stabilizing selection
gall-making flies larvae produce galls on goldenrod plants, but large and small galls were targeted by predation, so intermediate size was favored
126
example of disruptive selection
african seedcrackers (birds) small beaks can eat soft seeds, large can eat hard, medium aren't optimal for their
127
what does stablizing selection do?
maintain mean and reduce variance
128
what does disruptive selection do?
maintain mean and increase trait variance
129
what does directional selection do?
change the mean and potentially reduce trait variation
130
sexual selection
selection due to within-population competition for access to mates and their gametes
131
sexual selection is responsible for:
more diverse and extravagant traits in nature, rapid evolution, and increased speciation
132
anthropomorphism
attributing human traits or intentions to non-human entities innate tendency that we should avoid with this content
133
sexual selection occurs as a result of ___
variation in mating success not everyone gets to mate or the same amount of mates
134
what causes variation in mating success?
competition
135
gametes are the ___
main difference between males and females
136
egg
large and sessile gametes
137
sperm
small and mobile gamete
138
sexual possiblities
none (no gametes), two separate sexes (lions), hermaphroditism, sequential hermaphroditism
139
hermaphroditism
male and female gametes are produced in the same individuals common in plants
140
sequential hermaphroditism
individual start life as one sex and later transition into the other
141
sex roles
dependent on differences in parental investment between sexes
142
higher parental investment ->
limiting sex, has mating preferences
143
lower parental investment ->
limited sex, has mating competition
144
anisogamy
differences in gamete size
145
our ancestral state is ___
isogamy
146
isogamy
single mating type, everyone can mate with everyone else all gametes are same size universal compatibility
147
gamete trade-offs
large but slow/non-moving gametes with lots of resources vs. small but faster gamete with little resources
148
anisogamy is ___ distributed
disruptively
149
Bateman's principle
in most species, females invest more in reproduction than males, making them the limiting sex
150
male lifetime fitness is limited by ...
how many mates they can obtain
151
female lifetime fitness is limited by...
how much resources they have available to allocate reproduction
152
result of Bateman's principle?
females can be the more choosy sex and males have to compete for them roles can be reversed
153
can phenotypic plasticity evolve?
yes, it can be an adaptation ability to get fit more efficiently is heritable, but looking fit is not a heritable trait
154
reactive norm
range of phenotypic expressions of genotype across range of environments
155
example of phenotypic plasticity
male horned beetles use horns and body size to fight for females morphology determined by amount of food in larval period why spend resources on large body is you have small horns and you'll lose anyways?
156
common garden experiment
individuals with different phenotypes are grown under same conditions
157
genetically controlled in GCE if...
individuals maintain their wild traits
158
phenotypic plasticity in CGE if...
individuals shift to similar traits
159
what is the purpose of the common garden experiment
distinguishing genetic variation from phenotypic variation
160
what are mechanisms that maintain genetic variation?
meiosis/recombination, natural selection, gene flow, disruptive selection, negative frequency-dependent selection
161
mechanisms that decrease genetic variation
stabilizing selection, inbreeding, genetic drift, positive frequency-dependent selection
162
frequency dependent selection
fitness of individual is dependent on its relative frequency amongst the population
163
positive frequency-dependent selection
majority phenotype wins reduces genetic variation in population think mullerian mimicry butterflies
164
mullerian mimicry
two poisonous species mimic each other whatever looks like this won't get eaten
165
negative frequency-dependent selection
minority phenotype wins, promotes genotypic and phenotypic variation in population
166
example of negative frequency-dependent selection
purple/yellow morph flowers naive pollinators will switch between them as they search for different reward (nectar/pollen)
167
sampling effects
changes in allele frequency over time that are random with respect to their function or selection
168
founder effect
loss of genetic diversity bc of migration event in which smaller group "founds" their own population
169
example of founder effect
less genetic diversity as humans spread out from Africa
170
bottleneck effects
loss of genetic variation from dramatic reduction in population size and then recovery from it, new population descends from small number
171
example of bottleneck effect
northern elephant seals hunting reduced population to 20-40 individuals, today have extremely low genetic variation
172
genetic drift
changes in allele frequencies in population due to chance events
173
random sampling effects can lead to...
differences in numbers, sex ratio, or survival of offspring
174
genetic drift leads to...
evolution at random
175
example of genetic drift
beetles being crushed by shoe image
176
4 conclusions about genetic drift
its is unbiased, affects smaller populations ore, decreases genetic diversity over time, and generates divergence among populations imagine plots of multi-colored lines
177
endangered species example
florida panther caused by: poaching, vehicle collisions, habitat loss, and fragmentation
178
extinction vortex
cycle of factors worsening extinction status
179
in extinction, drift can increase...
inbreeding load can increase the frequency of deleterious alleles
180
example of morphological sign of inbreeding
kinked tails in florida panthers 88% had them in florida, only 9% in other cougar species
181
what does increase in genetic variation allow for?
better survival of the species can better withstand disease or deleterious alleles
182
what mechanisms of evolution did cheetahs experience?
genetic drift, bottleneck, and inbreeding
183
biological species concept
species are groups of interbreeding natural populations that are reproductively isolated from other such groups
184
what is the biological species concept largely based on?
reproductive isolation
185
limitations of biological species concept
1) problematic for species that can't feasibly be tested for reproductive isolation (spatial/temporal differences) 2) issues with getting species to mate in artificial conditions 3) hybridization is more common than we think
186
steps to speciation
1) genetic isolation 2) divergence of traits accumulate 3) reproductive isolation
187
vicariance
physical barrier causing dispersal
188
geological events
river formation, mountain ranges rising, continental drift
189
example of vicariance by climate change
pleistocene period cycle of glacial and interglacial periods that can lead to refugia and separate populations
190
refugium
places that isolated populations of once widespread species survive major environmental changes
191
species that experienced speciation by climate change vicariance
toucanets found glacial period refugia in separating forest canopies, but as they disconnected the species behaviorally wouldn't fly to other areas and they speciated
192
continental drift
movement of landmasses on earth's surface
193
consequences of continental drift on ecological systems
creates and breaks down barriers for dispersal weather impacted as positioning of continents and major oceans influences weather patterns
194
examples of vicariance by continental drift
pangaea (one large) -> gondwana and laurasia (two regions) -> n/s america, afria, asia, antarctica (5 regions)
195
population impacted by continental drift for speciation
ratites - type of flightless bird hypothesized they lived together in gondwana but as it fragmented, they were split apart and then speciated
196
genetic isolation can occur by...
physical barriers (vicariance), dispersal, or genetic barriers
197
dispersal example
islands or "sky islands"
198
what are sky islands?
mountain tops for alpine species with extreme arid climate in valleys between species don't behaviorally move from mountain top to mountain top because of these climate differences
199
examples of genetic barriers for dispersal
polyploidy, major chromosomal changes, other genetic changes
200
genetic barrier to dispersal meaning
egg and sperm can't fertilize each other
201
polyploidy problem
incompatible amounts of chromosomes
202
example of genetic isolation by genetic barrier
tree frogs Hylaversicolor = tetraploidy H. chrysosceli = diploid versicolor likely originated from chrysoscella genome duplication morphologically identical but different mating calls
203
diverge
accumulation of differences from each other (when populations have separated)
204
what can cause mutations to become fixed/lost in different populations?
selection and/or genetic drift
205
many species ___ reach full reproductive isolation
DON'T hybridization can happen more often than we may think
206
what are the classifications of isolating barriers?
premating, postmating prezygotic, postzygotic
207
what are premating barriers
prevention of transfer of gametes
208
what are postmating prezygotic barriers?
mating occurs, but zygote doesn't form
209
examples of prezygotic barriers
ecological (temporal, habitat, etc. prevent mates from meeting) sexual isolation or pollinator isolation (can meet, but don't ex: different mating calls or female not attracted to male)
210
what is temporal isolation?
periods of reproduction or emergence aren't compatible think cicadas in 13/17 yr cycles
211
what is habitat isolation?
species occupy different habitats in same geographic region think ladybugs feeding and mating on different species of plants
212
what are postzygotic barriers?
mating occurs, and zygote forms but hybrids have lowered fitness
213
examples of postzygotic barriers
heliconius butterflies- hybrids have lower fitness because they don't have appearance that camouflages them as poisonous species like parental species do (example of positive frequency-dependent selection, parent surviving bc of majority pheotype)
214
what are the two models of speciation?
allopatric and sympatric
215
what is allopatric speciation
speciation in non-overlapping regions more common 1) physical barrier 2) no gene flow 3) genetic differentiation
216
what is sympatric speciation?
speciation in overlapping regions 1) temporal/seasonal/ecological barrier 2) individuals can still come in contact and there can be significant gene flow 3) significant genetic differentiation
217
reminder about speciation
species ranges are subject to change, can be sympatric at one time and then allopatric at another
218
examples of sympatric speciation
1) soapberry bugs - adaptation of different beak lengths because of introduction to nonnative plant (smaller fruit) 2) palms of Lord Howe island - early flowering couldn't transfer pollen to later flowering ones
219
convergent evolution
organisms evolving to have similar traits because adapting to similar environments not necessarily recent common ancestor
220
example of convergent evolution
sugar glider (oceania) and flying squirrel (north/central america)
221
what is phylogeny?
evolutionary history of a group
222
what does a phylogeny tree do?
summarize evolutionary history can depict timing and pattern of branching events most closely related species should have the most traits in common
223
choose parsimonious tree
this will minimize the amount of evolutionary change, keep it simple!
224
keep in mind, phylogenies are ___
hypotheses based on data we have
225
homo sapiens are the ___ ___ of an otherwise extinct group of species
lone survivor
226
how long ago did human and chimp lineages diverge?
about 6-7 million years ago
227
what preceded H. sapiens?
several other species of hominin
228
what does hominin mean?
any species more closely related to human than chimpanzee
229
how are H. sapiens and chimps different?
1) fully upright posture 2) relatively hairless 3) smaller incisors 4) fully opposable thumbs 5) larger brain size for language 6) recognition of complex cause and effect 7) development of complex culture
230
anatomical differences between chimps and humans
1) flat face 2) long legs, short arms 3) very different pelvis shape 4) anterior foramen magnum (head is more central on spine, not sitting in forward posture) 5) s-shaped spine 6) curved feet
230
what is not so special about humans?
technology/tool use innovation communication cultural inheritance (evolution of a culture over time)
231
what are all anatomical differences adaptation for?
bipedalism
232
what is a trade off for our bipedalism traits?
terrible childbirth a lot of complications and death
233
additional differences between humans and chimps
a) extremely fine motor control (hands, lips, tongue, oral cavity) b) opposable thumbs and shorter fingers c) descended larynx (trade off: choking)
234
cost of humans having larger brains
higher metabolic rate relative to fat-free body mass than chimps, gorillas, and orangutans
235
what's an important consideration when forming a phylogenetic tree other than appearance?
geography
236
benefits of humans having larger brains
social brain hypothesis
237
social brain hypothesis
living in large social groups could have resulted in natural selection that favored larger brains bigger groups are more successful because of cooperation and accumulated and transmitted knowledge we need big brains for language to maintain those large groups' organization
238
what does radiation mean?
the rapid evolution of multiple species from a single ancestor
239
why do we not have a great understanding of human evolution?
we have a lot of incomplete skeletons because hominin bodies are terrible at fossilization, which is what we base a lot of ancestry info on there's also a lot of closely related lineages, leading to a lot of uncertainty
240
what are some limitations of fossil records?
we don't know when hominins lost body hair or started wearing clothing
241
lice
are highly specialized blood sucking parasites that live on a single host species a lot of ape relatives have one species, humans have three
242
co-speciation hypothesis
two sets of two species diverge at the same time in terms of humans and chimps, their lice diverged at the same time as them (6-7 mya)
243
where is it hypothesized that humans picked up pubic lice?
early gorillas sleeping in nests that were recently used by them or preying on them (lice are known to jump from prey to predator)
244
we can use phylogenies to...
test hypotheses about speciation such as when hominins lost body hair or started wearing clothing
245
key events in human evolution
1) shrewlike ancestors climbed scrubs and trees 80 mya 2) arboreal ancestors provided humans with binocular visions and skillful hands 3) as african climate dried, ancestors descended from trees 5-10 mya
246
all lineages of hominins originate in africa except...
neanderthals, denisovans, and H. floresiensis
247
what lineages migrated out of africa?
h. erectus, h. heidelbergensis, and h. sapiens (in that order)
248
other lineages that originated outside of africa
h. floresiensis, h. neanderthalensis, and denisovans
249
where did h. floresiensis originate?
indonesia
250
where did h. neanderthalensis originate?
europe
251
where did denisovans originate?
siberia
252
253
254
other hominins spread out of africa at least ___, before humans did so
twice led to new populations establishing and speciation events due to isolation and divergence all but h. sapiens went extinct
255
basic info of homo erectus
first lineage to leave africa long lineage, existed for about 1.5 my extinction likely due to climate change never coexisted with h. sapiens
256
range of h. erectus
all over africa, parts of europe, south and east asia, indonesia migration led to new populations establishing speciation event in indonesia originated h. floresiensis
257
h. floresiensis basic info
skull the size of modern day toddler's in indonesia
258
why were h. floresiensis skulls so small?
likely bc of island dwarfism
259
island dwarfism
typically large organisms evolve to have smaller bodies when on smaller geographic areas, like islands
260
island gigantism
opposite of island dwarfism typically small animals evolve to have larger bodies when on smaller geographic areas, like islands
261
h. heidelbergensis basic info
second lineage to leave africa migration led to new populations establishing speciation events due to isolationg and divergence: neanderthalensis in europe, denisovans in asia, h. sapiens in africa
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homo sapien basic info
originated in africa from heidelbergensis population that didn't migrate continued to evolve in africa until 60 kya, 2000 individuals migrated out of africa all humans outside of africa descended from those 2000 individuals - founder's effect much higher genetic diversity within native african populations what between populations on different continents
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what is the leaky replacement hypothesis
genes of other species of humans are still around today in non-african populations due to hybridization not a complete replacement by h. sapiens, some genetic mixing involved "leaky" = genes still around due to hybridization
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out of africa hypothesis
h. sapiens spread out from africa and replaced existing species of hominins, such as neanderthals or denisovans with no interbreeding
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multiregional continuity hypothesis
modern humans didn't originate from a single population in african but as multiple interconnected populations around the world also evolved from h. erectus disproven bc ethiopian fossils are the oldest ones we've ever found
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why were h. sapiens likely the lone survivor?
neanderthals and denisovans were better adapted to colder climates during interglacial periods, h. sapiens were able to expand upward and compete with other hominids for their niche h. sapiens had potential advantages: bigger brains, larger populations, pelvis adaptations for running, and division of labor in group living
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evidence of founders effect in humans
more deleterious mutations as we move away from africa less genetic variation and less room to evade them