Microbiology Superset RidEZ - Part 3 Flashcards
What is the histologic appearance of Mucor?
Just like Rhizopus
Mold with irregular, broad, empty looking, nonseptate hyphae branching at wide angles (over 90 degrees)
What is the histologic appearance of Rhizopus?
Just like Mucor
Mold with irregular, broad, empty looking, nonseptate hyphae branching at wide angles (over 90 degrees)
Which patients are likely to have Mucor/Rhizopus?
- Ketoacidotic diabetics
2. Leukemics
Where in the body does Mucor/Rhizopus proliferate?
- Walls of blood vessels, causing infarction of distal tissue
- Rhinocerebral frontal lobe abscesses
What is pneumocystis jirovecii?
Formerly pneumocystis carinii. Yeast (originally classified as a protozoan)
What disease states does Pneumocystis cause?
Most infection sasymptomatic. Immunosuppresion predisposes to disease.
How is pneumocystis diagnosed?
Lung biopsy or lavage. Methenamine silver stain of lung tissue.
Treatment for pneumocystis
Combination of TMP-SMX, Pentamidine, and Dapsone.
Characterization of sporotrix schenckii
Dimorphic fungus that lives on vegetation.
Presentation of sporotrichosis
- Traumatically introduced into the skin by a thorn
- Local pustule/ulcer with nodules along draining lymphatics (ascending lymphangitis)
- Little systemic illness
What is rose gardener’s disease?
Sporotrichosis
Histologic appearance of sporotrix schenckii
Cigar-shaped yeast visible in pus with unequal budding
Treatment for sporotrichosis
Itraconazole or potassium iodide
What disease states does Entamoeba histolytica cause?
- Amebiasis
- Bloody diarrhea (dysentery)
- liver abscess
- RUQ pain
What disease states does Giardia lamblia cause?
- Giardiasis
- Bloating
- Flatulence
- Foul-smelling diarrhea
What diseases are found in campers and hikers?
Yersinia pestis and Giardia lamblia
What disease states does Cryptosporidium cause?
Diarrhea
- AIDS: Severe
- Non-HIV: Mild watery
What disease states does Toxoplasma cause?
- HIV: Brain abscess
2. Birth defects (ring-enhancing brain lesions)
What disease states does Plasmodium cause?
Malaria:
- Cyclic fever
- Headache
- Anemia
- Splenomegaly
- Severe cerebral malaria (with Plasmodium falciparum)
What disease states does Trichomonas cause?
Trichomonas vaginalis causes vaginitis with foul-smelling greenish discharge, strawberry-colored mucosa, and itching and burning. Motile on wet prep.
What disease states does Trypanosoma cruzi cause?
Chagas’ disease:
- Dilated cardiomyopathy
- Megacolon
- Megaesophagus
What disease states does Trypanosoma gambiense cause?
African sleeping sickness
What disease states does Trypanosoma rhodesiense cause?
African sleeping sickness
What disease states does Leishmania donovani cause?
Visceral leishmaniasis (kala-azar or black fever): fever, weight loss, anaemia and substantial swelling of the liver and spleen
What disease states does Naegleria cause?
Rapidly fatal meningoencephalitis
What disease states does Babesia cause?
Babesiosis: Fever and anemia
Which protozoa are transmitted by cysts?
- Entamoeba histolytica
- Giardia lamblia
- Cryptosporidium
- Toxoplasma
All water cysts except Toxo (cysts in meat or cat feces)
Which protozoa are transmitted by insect?
- Plasmodium (Anophales mosquitoes)
- Trypanosoma cruzi (Reduviid bug)
- Other trypanosomas (Tsetse fly)
- Leishmania (Sandfly)
- Babesia (Ixodes tick)
Which protozoa are transmitted by swimming in freshwater lakes?
Naeglaria (via cribriform plate)
Which protozoa are transmitted sexually?
Trichomonas vaginalis
Which protozoa are transmitted by mosquito?
Plasmodium
Which protozoa are transmitted by reduviid bug?
Trypanosoma cruzi (the enses are transmitted by the tsetses, cruzii by reduviid))
Which protozoa are transmitted by tsetse fly?
Trypanosoma gambiense and rhodesiense (the enses are transmitted by the tsetses, cruzii by reduviid))
Which protozoa are transmitted by sandfly?
Leishmania
Which protozoa are transmitted by ixodes tick?
Babesia
How do you diagnose: Giardia lamblia
Trophozoites or cysts in stool (classic pair shaped organism with double nuclei like owl eyes)
How do you diagnose: Entamoeba histolytica
- Trophozoites or cysts in stool
AND/OR
- Serology
How do you diagnose: Cryptosporidium
Cysts on acid-fast stain
How do you diagnose: Toxoplasma
Serology, biopsy
How do you diagnose: Plasmodium
Blood smear
How do you diagnose: Trypanosoma
Blood smear
How do you diagnose: Babesia
Blood smear, no RBC pigment, appears as “maltese cross”
How do you diagnose: Leishmania
Macrophages containing amastigotes
How do you diagnose: Naegleria
Amebas in spinal fluid
Treatment for: Entameba histolytica
Metronidazole and iodoquinol
Treatment for: Giardia lamblia
Metronidazole
Treatment for: Trichomonas vaginalis
Metronidazole
Treatment for: Cryptosporidium
None
Treatment for: Naegleria
None
Treatment for: Plasmodium
- Choloroquine
- additonal Primaquine (for P. vivax and P. ovale to prevent relapse or liver damage)
- sulfadoxine plus pyrimethamine
- Mefloquine
- Quinine
Treatment for: Trypanosoma cruzi
Nifurtimox
Treatment for: Trypanosoma gambiense and rhodesiense
If blood-borne, suramin.
If CNS penetration, melarsoprol.
Treatment for: Leishmania
Sodium stibogluconate
Treatment for: Babesia
Qunine, clindamycin
Treatment for: Toxoplasma
Sulfadiazine plus pyrimethamine
Type of bug: Candida albicans
Dimorphic fungus, cutaneous OR systemic infection
Type of bug: Coccidioides immitis
Monomorphic fungus, systemic infection
Type of bug: Histoplasma capsulatum
Dimorphic fungus, systemic infection
Type of bug: Blastomyces dermatidis
Dimorphic fungus, systemic infection
Type of bug: Paracoccidioides brasiliensis
Dimorphic fungus, systemic infection
Type of bug: Malassezia furfur
Monomorphic fungus, superficial infection
Type of bug: Cladosporium werneckii
Monomorphic fungus, superficial infection
Type of bug: Microsporum
Monomorphic fungus, cutaneous infection
Type of bug: Trichophyton
Monomorphic fungus, cutaneous infection
Type of bug: Epidermophyton
Monomorphic fungus, cutaneous infection
Type of bug: Aspergillus fumigatus
Monomorphic fungus, opportunistic systemic infection
Type of bug: Cryptococcus neoformans
Monomorphic fungus, opportunistic systemic infection
Type of bug: Mucor
Monomorphic fungus, opportunistic systemic infection
Type of bug: Rhizopus
Monomorphic fungus, opportunistic systemic infection
Type of bug: Pneumocystis jirovecii
Monomorphic fungus, opportunistic systemic infection
Type of bug: Sporothrix schenckii
Dimorphic fungus, subcutaneous infection with some lymphatic spread
Type of bug: Entamoeba histolytica
Protozoan
Type of bug: Giardia lamblia
Protozoan
Type of bug: Naegleria
Protozoan
Type of bug: Plasmodium
Protozoan
Type of bug: Cryptosporidium
Protozoan
Type of bug: Toxoplasma
Protozoan
Type of bug: Trichomonas
Protozoan
Type of bug: Trypanosoma
Protozoan
Type of bug: Leishmania
Protozoan
Type of bug: Babesia
Protozoan
Type of bug: Taenia solium
Helminth: Cestode (Tapeworm)
Type of bug: Echinococcus granulosus
Helminth: Cestode (Tapeworm)
Type of bug: Schistosoma
Helminth: Trematode (fluke)
Type of bug: Clonorchis sinensis
Helminth: Trematode (fluke)
Type of bug: Paragonimus westermani
Helminth: Trematode (fluke)
Type of bug: Ancylostoma duodenale
Helminth: Nematode (roundworm)
Type of bug: Ascaris lumbricoides
Helminth: Nematode (roundworm)
Type of bug: Enterobius vermicularis
Helminth: Nematode (roundworm)
Type of bug: Strongyloides stercolaris
Helminth: Nematode (roundworm)
Type of bug: Trichinella spiralis
Helminth: Nematode (roundworm)
Type of bug: Dracunculus medinensis
Helminth: Nematode (roundworm)
Type of bug: Loa loa
Helminth: Nematode (roundworm)
Type of bug: Onchocera volvulus
Helminth: Nematode (roundworm)
Type of bug: Toxocara canis
Helminth: Nematode (roundworm)
Type of bug: Wuchereria bancrofti
Helminth: Nematode (roundworm)
Type of bug: Treponema
Spirochete
Which worm: Undercooked pork
- Taenia solium (tapeworm)
2. Trichinella spiralis (roundworm)
Which worm: Brain cysts
Taenia solium (tapeworm)
Which worm: Liver cysts
Echniococcus granulosus (tapeworm)
Important points about echinococcus granulosus
Tapeworm (Cestode)
- Ingested eggs from dog feces
- Liver cysts
- Cysts release antigens and cause anaphylaxis
Taenia solium: Treatment
Praziquantel/niclosamide. Albendazole for cysticercosis
Echinococcus granulosus: Treatment
Albendazole
Characterization of Schistosoma
Fluke (Trematode)
- Hosted by snails
- Penetrate skin of humans
Presentation of Schistosoma
Spleen and liver:
- Granulomas
- Fibrosis
- Inflammation
Schistosoma: Treatment
Praziquantel
Which worm: Portal hypertension
Schistosoma mansoni
Which worm: Hematuria
Schistosoma haematobium
Which worm: Bladder cancer
Schistosoma haematobium
Important points about Clonorchis sinensis
Fluke (trematode)
- Undercooked fish
- Inflammation of biliary tract
Which worm: Undercooked fish
Clonorchis sinensis
Clonorchis sinensis: Treatment
Praziquantel
Which worm: B12 deficiency
Diphyllobothrium latum (tapeworm)
Which worm: Undercooked crab meat
Paragonimus westermani (fluke)
Important points about Pargonimus westermani
Trematode (fluke)
- Undercooked crabmeat
- Inflammation and secondary bacterial infection of the lung
- Hemoptysis
Which worm: Hemoptysis
Paragonimus westermani (fluke)
Paragonimus westermani: Treatment
Praziquantel
Which worm: Microcytic anemia
Ancylostoma (aka hookworm) and Necator (both roundworms)
Which worm: Perianal pruritus
Enterobius vermicularis (aka pinworm, a roundworm)
Important points about Ancylostoma duodenale
Nematode (roundworm)
- Aka hookworm
- Larvae penetrate skin of feet
- Intestinal infection can cause anemia
Ancylostoma duodenale: Treatment
Mebendazole/pyrantel pamoate
Important points about Ascaris lumbricoides
Nematode (roundworm)
- Aka giant roundworm (Up to 1 foot in length!)
- Eggs are visible in feces.
- Intestinal infection
Ascaris lumbricoides: Treatment
Mebendazole/pyrantel pamoate
Important points about Enterobius vermicularis
Nematode (roundworm)
- Aka pinworm
- Food contaminated with eggs
- Intestinal infection
- Anal pruritus (scotch tape test)
Enterobius vermicularis: Treatment
Mebendazole/pyrantel pamoate
Important points about Strongyloides stercoralis
Nematode (roundworm)
- Larvae in soil penetrate the skin
- Intestinal infection
Strongyloides stercoralis: treatment
Ivermectin/thiabendazole
Important points about Trichinella spiralis
Roundworm (nematode)
- Undercooked meat, usually pork
- Inflammation of muscle
- Periorbital edema
Trichinella spiralis: Treatment
Thiabendazole
Important points about Dracunculus medinensis
Nematode (roundworm)
- In drinking water
- Skin inflammation and ulceration
Dracunculus medinensis: Treatment
Niridazole
Important points about Loa loa
Nematode (roundworm)
- Transmitted by deer fly
- Causes swelling in skin
- Can see worm crawling in conjunctiva
Loa loa: Treatment
Diethylcarbamazine
Important points about Onchocerca volvulus
Nematode (roundworm)
- Transmitted by female blackflies
- Causes river blindness
Onchocerca volvulus: Treatment
Ivermectin
Important points about Toxocara canis
Nematode (roundworm)
- Food contaminated with eggs
- Causes granulomas (if in retina, blindness)
- Visceral larva migrans
Toxocara canis: Treatment
Diethylcarbamazine
Important points about Wuchereria bancrofti
Nematode (roundworm)
- Female mosquito
- Causes blockage of lymphatic vessels (elephantiasis)
Wuchereria bancrofti: Treatment
Diethylcarbamazine
Which DNA viruses are double stranded?
All DNA viruses except for Parvoviridae
Mnemonic: All are dsDNA like ours, except “Part-of-a-virus” which is ss.
Which DNA viruses are single stranded?
Parvoviridae
Which DNA viruses have linear genomes?
All except papova virus and hepadna which are circular
Which DNA viruses have circular genomes?
papova virus and hepadna which are circular
Which RNA viruses are single stranded?
All except Reovirus (ds)
Mnemonic: All are ssRNA like ours, except “RepatO-virus” which is ds.
Which RNA viruses are double stranded?
Reovirus (ds)
Mnemonic: All are ssRNA like ours, except “RepatO-virus” which is ds.
Which DNA viruses have infectious naked nucleic acids?
Most dsDNA (except poxvirus and HBV)
Which DNA viruses have non-infectious naked nucleic acids?
poxvirus and HBV
Which RNA viruses have infectious naked nucleic acids?
+ strand ssRNA (almost the same as mRNA)
Which RNA viruses have noninfectious naked nucleic acids?
- strand ssRNA
Mnemonic: Always Bring Polymerase Or Fail Replication
- Arena
- Bunya
- Paramyxo
- Orthomyxo
- Filo
- Rhabdo
Which enveloped viruses acquire their envelopes from the plasma membrane?
All except herpesviruses (nuclear membrane)
Which enveloped viruses acquire their envelopes from the nuclear membrane?
Only herpesviruses
Which viruses are haploid?
All except retroviruses (diploid)
Which viruses are diploid?
Retroviruses
Where do DNA viruses replicate?
In the nucleus (except pox)
Where do RNA viruses replicate?
Cytoplasm (except influenza and retroviruses)
DNA virus families
Mnemonic: DNA viruses are HHAPPPy
- Hepadna
- Herpesviruses
- Adenovirus
- Parvovirus
- Papovavirus
- Poxvirus
Which DNA viruses are icosahedral?
All except pox (complex)
Which DNA viruses replicate in the nucleus?
All except pox (carries own DNA-dependent RNA polymerases)
Which DNA viruses are naked?
Mnem: Get naked for your PAP
- Parvo
- Adeno
- Papova
Which DNA viruses are enveloped?
HPH
- Hepadna
- Pox
- Herpes
Humoral or Cell-mediated immunity: Live attenuated vaccines
Both (with a few cases of reversion to virulence)
Humoral or Cell-mediated immunity: Killed vaccines
Humoral immunity (stable)
Live/Killed and Egg-based/Recombinant: MMR vaccine
Live attenuated, egg-based
Mnemonic: FRY an egg (Flu, mmR, Yellow fever)
Live/Killed and Egg-based/Recombinant: Sabin polio vaccine
Live attenuated
Live/Killed and Egg-based/Recombinant: VZV vaccine
Live attenuated
Live/Killed and Egg-based/Recombinant: Yellow fever vaccine
Live attenuated, egg-based
Mnemonic: FRY an egg (Flu, mmR, Yellow fever)
Live/Killed and Egg-based/Recombinant: Smallpox vaccine
Live attenuated
Live/Killed and Egg-based/Recombinant: Adenovirus vaccine
Live attenuated
Live/Killed and Egg-based/Recombinant: Rabies vaccine
Killed
Mnemonic: RIP Always (Rabies, Influenza, salk Polio, hAv)
Live/Killed and Egg-based/Recombinant: Influenza vaccine
Killed, egg-based
Mnemonic: FRY an egg (Flu, mmR, Yellow fever)
Mnemonic: RIP Always (Rabies, Influenza, salk Polio, hAv)
Live/Killed and Egg-based/Recombinant: Salk polio vaccine
Killed
Mnemonic: RIP Always (Rabies, Influenza, salk Polio, hAv)
Live/Killed and Egg-based/Recombinant: HAV vaccine
Killed
Mnemonic: RIP Always (Rabies, Influenza, salk Polio, hAv)
Live/Killed and Egg-based/Recombinant: HBV vaccine
Recombinant (antigen is recombinant HBsAg)
Definition: Viral recombination
Exchange of genes between 2 chromosomes by crossing over within regions of significant base sequence homology
What is this viral process: Exchange of genes between 2 chromosomes by crossing over within regions of significant base sequence homology
Viral recombination
Definition: Viral Reassortment
Viruses with segmented genomes exchange segments. Same as high frequency recombination. Cause of worldwide pandemics.
What is this viral process: Viruses with segmented genomes exchange segments.
Viral Reassortment
Same as high frequency recombination. Cause of worldwide pandemics.
Definition: Viral Complementation
When 1 of 2 viruses that infect the cell has a mutation that results in nonfunctional protein and the non-mutated virus “complements” the mutated one by making a functional protein that serves both viruses.
What is this viral process: When 1 of 2 viruses that infect the cell has a mutation that results in nonfunctional protein and the non-mutated virus makes a functional protein that serves both viruses.
Viral Complementation
Definition: Viral Phenotypic Mixing
Genome of virus A can be coated with the surface proteins of virus B. Type B protein coat determines the infectivity of the phenotypically mixed virus. Progeny of type A however have type A coat from type A genes.
What is this viral process: Genome of virus A can be coated with the surface proteins of virus B. Type B protein coat determines the infectivity of the phenotypically mixed virus.
Viral Phenotypic Mixing
Progeny of type A however have type A coat from type A genes.
What does it mean for a virus to be naked?
It has only a nucleocapsid, and no envelope.
Which RNA viruses are enveloped?
- Measles
- Mumps
- Rubella
- RSV
- Rabies
- HTLV
- HIV
- Influenza
- Parainfluenza
Mnem: MMRRHHflu
Which RNA viruses are naked?
Mnemonic: Naked CPR
- Calicivirus
- Picornavirus [Enteroviruses (polio, coxsackie, echo, HAV), Rhino]
- Reovirus
What does it mean for viruses to be negative stranded?
Must transcribe negative strand to positive, using RNA polymerase.
Negative stranded viruses
Mnem: Always Bring Polymerase or Fail Replication
- Arenaviruses
- Bunyaviruses
- Paramyxoviruses
- Orthomyxoviruses
- Filoviruses
- Rhabdoviruses
Segmented viruses
Mnem: BOAR
- Bunyaviruses
- Orthomyxoviruses (flu)
- Arenaviruses
- Reovirus
How many segments in influenza?
8
Which RNA viruses are linear?
All except the BAD seeds (Bunyavirus, Arenavirus, Deltavirus)
Which RNA viruses are circular?
the BAD seeds
- Bunya
- Arena
- Delta
Which RNA viruses are icosahedral?
Naked (CPR) FaRT
- Calici
- Picorna
- Reo
- Flavi
- Retro
- Toga
Which RNA viruses are helical?
Mnemonic: The COP BARFeD up a helix.
- Corona
- Orthomyxo
- Paramyxo
- Bunya
- Arena
- Rhabdo
- Filo
- Delta
Which viruses have reverse transcriptase?
Retro and HBV