Microbiology Flashcards
Microbiology
Is the study of organisms that are too small and are not visible clearly to the naked eye or un-aided eye when they exist individually.
Microorganisms general size
Less than 0.1mm
Extremophiles
Some microorganisms are capable of inhabiting extreme environmental conditions that are unfavourable or even lethal for other organisms.
Thermophiles - condition
High temperatures
Psychrophiles - condition
Low temperatures
Acidophiles - condition
acid pH
Alkaliphiles - condition
basic pH
Halophiles - condition
require NaCl
Barophiles - condition
high pressure
High growth rate of microorganisms
Posses a high surface area to volume ratio due to their small size.
Flowing rate of materials in to the inside of the cells and exit of waste materials to the outside of the cells increases and results in high metabolic rate.
Average generation time or the time taken required to double the population of microorganisms is relatively less.
Basic 3 distinct shapes of bacteria
Rod shape - Bacillus
Spherical shape - Coccus
Spiral shape - Spirillum
2 morphological varieties found in virus according to the symmetry of protein coats
Icosahedral
Helical
4 major nutritional types seen among microorganisms
Chemoautotrophs
Chemoheterotrophs
Photoautotrophs
Photoheterotrophs
4 physiological groups of microbes
Obligate aerobes
Obligate anaerobes
Facultative anaerobes
Microaerophiles
2 types of nitrogen fixing microbes with examples
Free living - Azotobacter sp
Symbiotic - Rhizobium sp. with legume roots
Different forms of coccus bacteria
Coccus
Diplococcus
Streptococcus
Tetrad
Sarcinae
Straphylococcus
Coccus
Cells divide in 1 plane
Divided cells detach from each other after cell division
Diplococcus
Cells divide in 1 plane
Divided cells remain in pairs
Streptococcus
Cells divide in 1 plane
Divided cells remain attached in chain like patterns
Tetrad
Cells divide in 2 planes producing 4 cells remain attaches together
Sarcinae
Cells divide in 3 planes and remain attached in group of 8 cells
Straphylococcus
Cells divide in multiple planes and form grape like cluster of cells
Types of bacilli bacteria
Single bacillus - Single rod
Diplobacillus - Remain in pairs after cell division
Streptobacillus - Occurs in chain after cell division
Types of spiral bacteria
Vibrio - Bacteria look like curved rods
Spirillum - Helical shape, like a corkscrew and rigid body
Spirochete - Helical shape, flexile body
Photoautotrophs (source of energy, source of carbon and examples)
Light
CO2
Purple sulfur and green sulfur bacteria
Photoheterotrophs (source of energy, source of carbon and examples)
Light
Organic carbon
Purple non sulfur bacteria
Chemoautotrophs (source of energy, source of carbon and examples)
Inorganic chemicals
CO2
Nitrobacter, Nitrosomanas, Thiobacillus thiooxidans
Chemoheterotrophs (source of energy, source of carbon and examples)
Organic chemicals
Organic carbon
Most bacteria
Obligate aerobic
Require O2 for their survival
Generate energy by oxidative phosphorylation
Acetobacter sp.
Obligate anaerobic
Cannot survive in the presence of O2
Generate energy by fermentation
Clostridium sp.
Facultative anaerobic
Prefer to grow in the presence of O2 producing energy by oxidative phosphorylation
They can also grow in anaerobic environments using fermentation
Escherichia coli
Microaerophilic
Can grow only in O2 concentrations lower than those in air
Lactobacilus sp
Reproduction methods of bacteria
Mostly undergoes asexual reproduction - Binary fission, fragmentation or budding
Performs conjugation as a sexual method
Unicellular and colonial forms of Cyanobacteria
Majority of unicellular forms stay together by copious secretion of mucilage by daughter cells.
In colonial forms cells remain attached by walls or held in a common gelatinous matrix forming a colony of cells. Types - spherical, cubical, square or irregular shape.
2 types of nitrogen fixing cyanobacteria
Free living - Nostoc sp.
Symbiotic - Anabaena-Azolla sp
Heterocyst and akinete of Cyanobacteria
Nitrogen fixation takes place in special cells called heterocyst. Nitrogen fixation is catalysed by the enzyme nitrogenase. Nitrogenase is sensitive to O2. Heterocyst carry thick cell wall to protect nitrogenase from O2
Akinete is a thick walled resting spore with stored food. Akinete is resistant to drought and high temperatures. They are able to survive during unfavourable environmental conditions although vegetative cells dries out.
Reproduction seen in Cyanobacteria
Reproduces only by asexual methods
Single unicellular forms and colonial non-filamentous types by simple cell division
Colonial unicellular and colonial filamentous by fragmentation
sp. meaning in microbiology
Species
Nutritional modes seen among fungi
Saprophytic (decomposers)
Parasitic (plant and animal pathogens)
Mutualistic (lichens and mycorrhizae)
Reproduction seen in fungi
Unicellular fungi reproduce asexually by fission or budding
Filamentous fungi asexually or sexually by producing spores
Pleomorphic meaning
Occurring in various distinct forms
Nutritional modes seen among protists
Photoautotrophic
Heterotrophic
Mixotrophic
Respiratory modes seen among protists
Aerobic
Anaerobic
Facultative anaerobic
Reproduction seen among protists
Reproduce sexually by gametes and asexually by fission
Mollicutes
Mollicutes are prokaryotes included in the domain Bacteria
Mycoplasma and phytoplasma are considered unique due to the absence of cell walls
Mycoplasma
Pleomorphic
Smallest prokaryotic group of microorganisms invisible under the light microscope
Do not contain flagella
Almost all mycoplasma are parasites of humans and animals
Reproduce by budding and binary fission and do not posses spores
Requires high amount of growth factors
Aerobes or facultative anaerobes
Phytoplasma
Similar in size to mycoplasma
Only can be seen under the electron microscope
Phytoplasma only infect plants and are generally present in the phloem sap
Cannot grow in artificial media
Transmitted mostly by leafhoppers
Reproduce in both leafhoppers as well as plant body
Reproduce by binary fission and budding
Posses aerobic or facultative anaerobic mode of respiration
Characteristic features of virus
Do not show any cellular organisation
Not considered as living organisms
Can only multiply with a host cell (obligate parasites)
Composition of viruses
Composed of a central core of nucleic acid and surrounded by a protein coat called the capsid which is made up of a fixed number of protein subunits called capsomeres
May have either DNA or RNA as their genetic material
Depends on the host cell’s protein synthesis machinery
Consists of reverse transcriptase enzymes for reverse transcribing RNA into DNA
4 types of morphological forms of virus and examples
Helical viruses- Long rigid or flexible rods e.g: Rabies virus
Icosahedron - Icosahedron symmetry e.g: Aden virus
Complex - Exhibits more than one form of symmetry with additional structures e.g: Bacteriophage
Enveloped viruses - Roughly spherical. Capsid covered by envelopes e.g: Herpes simplex virus
Bacteriophages
Are typical group of viruses that are capable of infecting bacteria
2 distinct multiplication mechanisms of viruses
Lytic cycle
Lysogenic cycle
Difference between lytic cycle and lysogenic cycle
Lytic cycle involves with the lysis of the host cell whereas the lysogenic cycle allows viral DNA incorporating into host DNA and multiply without causing lysis of the host cell
Steps of lytic cycle
Attachment
Penetration
Biosynthesis
Maturation
Release
Viroids
Consist only of short piece of RNA with no protective layer such as a protein coat
Can only multiply within a host cell
Do not contain any gene and only carry signals for their multiplication
Viroids infect plants, but no other life forms unto date
Prions
Are proteinaceous infectious particles.
Smaller this virus
Lack nucleic acid but can replicate with the help of host’s gene that encodes the prion protein
Found as disease causing agents in some birds and mammals
All these diseases are neurological diseases
Diseases caused by prions
All are neurological
Transmissible Spongiform Encephalopathies (TSEs) - Large vacuoles develop in the brain giving spongy like appearance
Mad cow disease (emerged in cattle)
Creutzfeldt-Jakob disease (CJD) is one of the human diseases caused by prions
Sterilisation
Process of removal or destruction of all forms of microbial life including endospores
2 types as physical and chemical
Physical methods of sterilisation
Moist heat sterilisation (done by denaturing proteins under high temperature and pressure)
Dry heat sterilisation - direct flaming, Incineration, Hot-air sterilisation
Pasteurisation
Boiling
Filtration
UV radiation
Moist heat sterilisation
Moist heat is used to sterilise culture media, heat stable reagents and laboratory equipments. E.g: autoclaving, pressure cookers
Dry heat sterilisation
Dry heat is used to sterilise glassware, Petri dishes, pipettes, inoculation loops and needles and scalpels
Types of pasteurisation
High temperature short-time (HTST) - 72 C , 15 s
Low temperature long time (LTLT) - 63 C, 30 min
Ultra high temperature (UHT) - 140 C, less than 5 s