L-30 Flashcards
What percentage of our cells are human vs microbes?
50%
What are microbiota?
Individual microbial species in a biome (bacteria, fungi, archaea, viruses0
What are the levels of classification of organism (from least to most specific)
- domain
- phylum
- class
- order
- family
- genus
- species
- strain
How many bacterial phyla are there?
92
How many Archael phyla are there?
26
What is the aim of the human microbiome project?
To characterise microbial communities found at multiple human body sites and to look for correlations between changes in the microbiome and human health
What method of microbial community characterisation did the human microbiome project use?
Culture-independant
Where are the areas of interest for the HMP?
- oral
- skin
- vaginal
- gut
- nasal/lung
What are the 5 goals of the HMP:
- To develop a reference set of microbial genome sequences and perform preliminary characterisation of the human microbiome
- To explore the relationship between disease and changes in the human microbiome
- To develop new technologies and tools for computational analysis
- To establish a research repository
- To study the ethical, legal, and social implications of human microbiome research
What is the genetic diversity of an individuals gut bacteria as opposed to the human genome?
50x
What percentage range of the genera, enzyme families and community configurations occupied by healthy Western microbiome has the HMP documented?
81-99%
How many species of microbes does the average person have? How many of these are really common between people?
- 160
- 57
What are the 8 functions of the human microbiome:
- preventing pathogens from being successful
- block colonisation niches
- competing for nutrients (stops pathogens from getting nutrients)
- modifying environments to change virulence factor expression
- making environments actively hostile: producing bacteroicins (antimicrobial) & short chain fatty acids (SCFA)
- lowering pH (vagina)
- cause host to thicken mucus layer
- cause host to upregulate antimicrobial peptides (defensins)
- primes host neutrophils and macrophages
What are the 4 main types of human gut microflora?
- firmicutes
- bacteroidetes
- actinobecteria
- proteobacteria
What area of the body has the highest density of microbes in the human body
The gut