HCV part 1 Flashcards

1
Q

How did people discover hep c

A

In the 1980s large numbers of hepatitis patients began to appear, apparently with a virally caused disease
* When examined, patients tested negative for both hepatitis A and B
* HCV, the etiologic agent of non-A, non-B hepatitis, was discovered by Michael Houghton and investigators at Chiron, Inc.

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2
Q

true or false: it was hard to discover hep c and which techniques were used

A

-true
- cdna, phages for e.coli, expressed the modified phage that had the cdna in them

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3
Q

which virus is responsible for 40-60% of the chronic liver disease

A

Hep C

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4
Q

True or false: Hep C is the leading cause of liver transfer

A

treu

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5
Q

how do you get hep c

A
  • Blood transfusion
  • Injecting drug use
  • High-risk sexual activity
  • Other
  • Health-care workers
  • Hemodialysis
  • Mother-to-child (low)
  • Unknown
  • Household exposures/accidental injuries
  • Cocaine use
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6
Q

Diagnosis of hcv

A
  • Not part of a standard STD panel
  • Serology (enzyme immunosorbent assay)
  • Look for anti-HCV antibodies in the blood (once
    exposed to infection)
  • > 95% of chronically infected patients
  • Viral genome copies (qPCR)
  • Look for viral RNA in the blood (active infection)
  • genotyping
  • Assess degree of liver damage
  • Serum liver enzyme elevation (liver health);
    Fibroscan (Liver inflammation/fibrosis)
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7
Q

what is the incubation pereod of acude hepatitis

A

6-10 weeks

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8
Q

True or false: 80% people with acute HCV will have no symptoms

A

true

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9
Q

symptoms of acute hepatitis, clearance rate

A

Symptoms can include:
- Pain in the upper right quadrant,
anorexia, abdominal pain, nausea,
vomiting, fever, fatigue, and jaundice
(25%)
* Approximately 15% will clear the infection
* 85% will develop chronic HCV

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10
Q

True or false: chronic hepatitis can last your whole life

A

true

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11
Q

what happens to your liver when you have chronic hepatitis

A
  • Cirrhosis (scar tissue) and liver failure (10-20%)
  • Hepatocellular Carcinoma (liver cancer, 3-5%)
  • Typically clinical symptoms appear during liver failure
  • 20 yrs may elapse between infection and the development of serious complications
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12
Q

HCV genome

A
  • 9.6 kb, (+) sense, ssRNA virus
  • Single long open reading frame (~3000 aa polyprotein)
  • cleaved by host and viral proteases into the 10 mature viral proteins
    -has IRES, kissing loop and a pseudi knot
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13
Q

What are the 2 models for LVPs of HCV

A

-lvp: lipoviral particles
-two particle model: it interacts with more than one apo protein: LDL and HDL
-single particles: the most accurate, interacts with one lipoprotein

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14
Q

HCV entry

A

Receptors: CD81, CLDN-1, OCLN
* Co-receptors/co-factors: GAGs, LDLR, SR-BI
* Lipoproteins play a prominent role in entry (i.e. LVPs)
* Clathrin-mediated endocytosis

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15
Q

true or false: HCV is capped

A

false it is not

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16
Q

translation of HCV

A

Cap-independent translation is
accomplished by the Internal
Ribosome Entry Site (IRES)
element
- SLII-IV of the 5’ NCR
- Binds to the 40S subunit of the
ribosome (uses only eIF2 & 3)
- Places the start codon (AUG)
in the P site of the ribosome
(for initiation of translation)

17
Q

what do NS3 and Ns5B do in hcv

A

they form the replication complex
* Replication Complex:
* NS3 (helicase) + NS4A (NS3 cofactor)
* NS4B = membrane reorganization
* NS5A = phosphoprotein, RNA replication and assembly?
* NS5B = RNA-dependent RNA polymerase (RdRp)

18
Q

HCV rna replication occurs on///

A

membranous webs
* Vesicles contain pores that
may allow transport of viral
genomic RNA in and out
* The pore stains with nuclear
pore complex-specific
antibodies
* Nuclear localization
sequences can direct
proteins to the inside of these
vesicles

19
Q

true or false: membranous webs are uncommon with +rna viruses

A

false they are common

20
Q

what is the use of membranous webs

A
  • Physical support?
  • Compartmentalization
  • Protection
  • Tethering of RNA from unwinding
  • Retention of the negative strand
21
Q

membranous webs are derived from which membrane and are induced by what?

A
  • Derived from the ER
  • Lipid constituents (lipid droplets, LDs)
  • Double Membrane Vesicles (DMVs)
  • Multi-Membrane Vesicles (MMVs)
  • Induced by NS4B
22
Q

what is NS5B responsible for in HCV

A
  • RNA-dependent RNA polymerase
  • ‘right-hand’ topology
  • initiation is de novo
  • GTP is generally accepted as the
    initiating NTP (in vitro)
  • requires divalent metal ions
23
Q

true or false: HCV rdrp is error prone af

A

true
Error prone (replication rate = 1012
viral particles/day)
- RESULT: spectrum of genetic
variants (genotypes/subtypes;
quasispecies)

24
Q

true or false: we still don’t know all the tea about hcv assembly

A

true

25
Q

virion assembly hcv

A

-Both structural proteins (E1/E2, Core) and nonstructural proteins
-(p7, NS2, NS3/4A, NS5A) participate in assembly and packaging

26
Q

what does p7 do? in hcv

A

Viroporin = ion channel; promotes pH-mediated maturation
and release of infectious viral particles from the cell

27
Q

how do we study hcv

A

-hcvpp
-replicons
-hcvcc

28
Q

HCVpp

A

-pseudo particles: basically faje outside particles
* Pros:
- easy to perform
- entry inhibitors
- glycoprotein mutagenesis
* Cons:
- particles made in non-hepatic cells
‣ glycosylation?
‣ misfolding (E1/E2)?
- inefficient

29
Q

Replicons

A

-basically NS proteins with reporter genes
* Pros:
- non-infectious
- isolates the replication step
‣ protease, polymerase, and NS5A
inhibitors
- multiple genotypes can be studied
* Cons:
- Ignores contributions from the structural
proteins
- Results might not translate to infectious
cycle

30
Q

HCVcc

A

-cell culture derived hcv; discovered by a japanase dude. Works really well
- JFH-1 produces infectious virus in cell culture (10^2-10^3 ffu/
ml)
* Huh-7.5 cells
- sub-clone of Huh-7 with an inactivating mutation in RIG-I
* Chimeric viruses now exist for all 7 genotypes
- produce varying levels of infectious virus
* Pros:
- Structural genes from all genotypes can be studied
* Cons:
- completely artificial
- all contain JFH-1 nonstructural genes