Genetics/Syndromes Flashcards
CHARGE
CHARGE syndrome.
CHD7 gene- most sporadic
C (coloboma)
H (congenital heart defects)
A (choanal atresia)
R (retardation of growth/developmental)
G (genital anomalies)
E (ear anomalies or deafness.)
VACTERL association
VACTERL
- Due to disruption in early embryogenesis
V (vertebral defects)
A (anal atresia)
C (cardiac defects)
T (tracheo-oesphageal defects)
R (renal anomalies)
L (limb abnormalities.)
Rubenstein-Taybi
Microdeletion chromosome 16
- Short stature
- Mod-severe ID
- Broad fingers/toes gap
- Facial features as per pic
DiGeorge
CATCH22
2q11.1 deletion syndrome
C- heart defects
A-
T- Thymic hypoplasia, absent T/B cells
C- Cleft palette
H- Hypocalcemia
poor immune system function, cleft palate, hypocalcaemia and delayed development.
Loeys-Dietz
AD/75% de novo
SMAD3, TGFB
Overview: cardiac aneurysms, joint laxity, bifid uvula
Aneurysms/dissections
Pectus excavatum/carinatum, scoliosis, joint laxity,arachnodactyly/talipes, C-spine malformations
BIFID UVULA, wide spaced eyes, craniosynostosis
Skin: translucent/easy bruising
Homocysteinuria
AR- CBS mutation, intermediate in methionine → cysteine
Overview: joint contractures, inferior lens dislocation, low IQ, stroke risk
B6 responsive (mild/unresponsive)
Ectopia lentis (downward), tall stature/long limbs, pectus, scoliosis, CVA/VTE, dev delay/ID
Ix: elevated total homocys/met
Rx: B12/folate, met restricted diet
Marfans
AD, FBN1 gene, 25% denovo
Overview: joint laxity, superior lens dislocation, normal IQ
Ectopia lentis (sup) 50-80%
Aortic root dilatation/MVP/TVP
Skeletal overgrowth, arachnodactyly, joint laxity, scoliosis
High arched palate, retrognathia
N IQ
Score: Ghent criteria >7 to diagnose
Shprintzen-Goldberg syndrome
Craniosynostosis
Narrow head, hypertelorism, high arched palate, micrognathia, Marfanoid body habitus
Delayed development/ID
Poor tone, umbilical hernias
Types of genetic tests overview
Chromosomal testing
- Cytogenetics: karyotype
- Molecular cytogenetics: microarray, FISH, MLPA
Imprinting
- DNA methylation studies
Known mutations
- Single gene analysis
- SNP array
- MLPA
Unknown mutations
- NGS, WES, Sanger sequencing (slow)
Trinucleotide repeat analysis
- For TNA disorders i.e DMD, FXS
- Amplify DNA then Southern blot
When to use different genetic tests
Gene defects
- Microarray: duplications or deletions, unbalanced/microdeletions
- Karyotype: aneuploidies, sex chromosomes, translocations
- SNP array (single nucleotide polymorphisms): consanguinuity/wide genome screen
- FISH- microdeletions/duplications, need to have idea of gene that youre looking for
- MLPA- PCR amplification in area of interest- small deletions/duplications
Imprinting/TNA:
- Triplet repeat analysis: PCR then southern blot
- Methylation studies: UPD (if neg = imprinting)
Unknown
- NGS, WES
Other:
-Chromosomal breakage test: Fanconi, hereditary spherocytosis, AT
What do S,N,W Blots look for?
Blots (SNoW DRoP)
Southern = DNA
Northern = RNA
Western = Protein
Broad genetic screening tests- types of sequencing?
Sanger sequencing: screening for unknown mutation
Whole exome sequencing (WES)
- Exons (coding regions)
- Slower than targeted panels
- Can identify genes responsible for pathology
Next Gen Sequencing/whole genome
- All genes, translocations and non-coding DNA
- Cannot detect triplet repeats pr methylation defects
Types of cytogenetics, method and role?
Cytogenetics
Can identify: aneuploidies, large chromosomal imbalances, balanced/unbalanced translocations
(NOT- single gene, microdeletions, triplet repeat, imprinting)
Karyotype: directly analyses whole chromosomes
- Used for trisomies/monosomies- T21, Klinefelter/Turner
Molecular cytogenetics
Microarray
Can identify: gains/losses in genetic material
- CGH: compares DNA from 2 sources
- SNP: compares to control, can detect heterozygosity (more information)
uses: microdeletion/dup, single gene diagnoses
FISH
Can identify: presence/absence of DNA sequences on chromosomes, balanced rearrangements, localisation of DNA targets
i.e Trisomy, microdup/del- DiGeorge, Williams
MLPA
Can identify: duplication/deletions- amplifies DNA and seperates based on size
Klinefelters- 47XXY
Non-disjunction of X chromosome in meitotic division
1 in 800-1000 males
More common than turners
Breast tissue, wide hips, & euchanoid habitus- increased height/clinodactyly, reduced muscle bulk
Reduced libido/decreased fertility, testes smaller, may have hypogonadism
Language disabilities/ADHD, shy/depression
55% MVP
Ocular albinisim OA1
X-linked disorder
- Limited eye disease
- Poor vision/nystagmus
- Mums (carrier) may also have ocular albinism/mosaicism
Tietz syndrome
-MITF gene mutation (also seen in Waardenburg)
- Heterochromia/greying of hair
- Pale blue eyes/blonde hair
- Congenital deafness
- Hair colour may change
Waardenburg syndrome
- Heterchromia, white forelock
- SNHL with normal external eat
Jervell-Lange-Neilsen
Deafness/SNHL & long QT
Usher syndrome
SNHL & normal external ear
Retinitis pigmentosa
Pendred syndrome
SNHL, normal external ear
Hypothyroidism
Alport syndrome
COL2
Haematuria/nephritis
SNHL & normal external ear
Anterior chamber eye abnormalities
Chediak-Higashi Syndrome
Disorder of vascular trafficking (AR) Partial oculocutaneous albinism
Recurrent pyogenic infections
- Will develop HLH
Coagulopathy
Neurological abnormalities
Ix: giant cytoplasmic granules in leucocytes/platelets - pathognominic
Rx: HSCT- does not fix eye/skin/neuro abnormalities
Vici syndrome
-Congenital agenesis of the corpus callosum
- Bilateral cataracts
- Hypopigmentation of skin and hair
- Cardiomyopathy
- Immunodeficiency
Griscelli syndrome
Disorder of vascular trafficking (AR)
RAB27a gene
- Sparse/hypopigmented hair
Oculocutaneous albinism - Neutropenia
- NO giant granules
Hermansky-Pudlak syndrome
AR
Oculocutaneous albinism
Visual impairment
Platelet dysfunction and prolonged bleeding
Abnormal storage of a fatty-like substance (ceroid lipofuscin
Norrie Disease
X linked
- Microcephaly
- Bilateral retinal dysplasia
- Neuropsychiatric symptoms.
Incontinentia Pigmenti
X-linked recessive (lethal in males, only females affected)
- Skin lesions (hypopigmented initially)
- Retinal dysplasia
Inheritance patterns
- Autosomal dominant
Males and females
Every affected person has at least one affected parents
3/4 children affected
Inheritance patterns
- Autosomal recessive
Increased in consanguinity
Males and females
Parents not affected (carrier 1/4)- skips a generation
Inheritance patterns
- X-linked dominant
Mum to all sons
Males often die/females affected
All daughters of affected male will receive gene
Inheritance patterns
- X-linked recessive
Mum to all sons
Females NOT affected
All daughters of affected male will receive gene
Inheritance patterns
- Translocation
Phenotypically normal carrier with increased risk of miscarriages or abnormal offspring (both males and females)
Reciprocal: break into two parts and exchange
Robertsonian: fusion of two short arms near centromere (45 not 46)
Inheritance patterns
- Imprinting
Gene expression depends on which parent the chromosome came from
- Maternal imprinting = maternal gene silenced (pat expressed)
- Paternal imprinting = paternal gene silencing (mat expressed)
Occurs during gametogenesis/embryonic development
Inheritance patterns
- Triplet repeat
Disease becomes more severe as generations go on
(greater expansions with each inheritance)
- I.e Fragile X, Huntington, Myotonic dystrophy, spinocerebellar ataxia
Inheritance patterns
- Mitochondrial
Mum affected, passes on to both sexes
Inheritance patterns
- Mitochondrial
Mum affected, passes on to both sexes
Autosomal dominant with incomplete penetrance
Males and females
Can skip a generation but sometimes transmitted
Meier-Gorlin syndrome
ORC1 gene: short stature, microcephally, micrognathia, under-developed or absent patella and small ears.
Pierre Robin sequence
- Micro/retrognathia, mandibular hypoplasia
- Glossoptosis
- Cleft palate WITHOUT cleft lip
Rx: prone positioning, NGT feeds/NPA, surgical distraction if severe
Miller Syndrome
Malar hypoplasia, micrognathia, cleft lip and cleft palate and downward slanting eyes
Duane Syndrome
Sporadic, some AD
Congenital strabismus
L) > R) eye
Type 1 = difficulty with abduction (one D in abduction)
Type 2 = difficulty with adduction (two Ds in adduction)
Type 3 = difficulty with both (3 Ds in abduction and adduction).
80% of cases are type 1
Associations: Klippel-Feil anomaly and hemifacial microsomia
Goldenhaar/Hemifacial microsomia
1 in 5,000
- Unilateral orbit, ear, facial muscle &mandible hypotrophy
- Microtia/hearing loss
- Epibulbar dermoids (eye)
Townes-Brocks
SALL1 gene TCOF1 gene
- Dysplastic ears
- Imperforate anus
- Malformed thumbs
Treacher-Collins
TCOF1 gene
- Midface hypoplasia
- Cleft palette
- Ear & eye abnormalities
Pendred syndrome
Iodine transport mediated by pendrin
= giotre + SNHL
- Usually no thyroid dysfunction, may have mild hypothyroidism