Gene expression Flashcards

1
Q

rRNA

A

> 80% of total RNA

  • few kinds, many copies
  • small and large rRNAs
  • highly conserved
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2
Q

tRNA

A

less than 15%
small
each one dedicated to one of 20 amino acids

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3
Q

mRNA

A

2-5% of total RNA

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4
Q

what do you need for transcription

A

making RNA
template- DNA
enzyme- RNA polymerase
substrate- NTPs- ribonucleotides

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5
Q

how is RNA synthesised

A

5’ to 3’

DNA read 3’ to 5’

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6
Q

what is needed for promoter binding

A

transcription factors

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7
Q

Trancription initiation

A
  • transcription factor binds promoter
  • binding is directional on TATA box
  • RNA polymerase recruited
  • unwinding DNA helix
  • formation of a transcription bubble
  • transcription initiates, directionally 5’-3’
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8
Q

what is the TATA box

A

specific sequence on all promotor sequences

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9
Q

transcription elongation

A
  • RNA synthesis from 5’ - 3’
  • template strand is read 3’ - 5’
  • single stranded RNA molecule is made
  • only one DNA strand is used as a template

-as transcription bubble advances, DNA helix reforms behind it

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10
Q

coding strand

A

non-transcribed DNA strand

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11
Q

non-coding starnd

A

transcribed DNA strand

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12
Q

transcription termination

A
  • sequence-dependant, other factors involved
  • results in a primary RNA molecule
  • RNA processing needed to produce mature RNA
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13
Q

RNA processing

A
  • post-translational modifications
  • rRNA and tRNA
    • chemical modicfications and cleavage
  • mRNA
    • eukaryotes|: capping, splicing and tailing
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14
Q

Capping

A

5’ cap
methylated-g linked 5’-‘5’

provides protection
plays role in translation

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15
Q

tailing

A

3’ poly A tail

for protection and reglation

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16
Q

splicing

A

highly accurate removal of introns

exons joined together by splicosomes- ribonucleoprotein complex

mature mRNA contains ORF- open reading frame plus 5’ UTR and 3’UTR (untranslated region)

splicing errors can cause disease

17
Q

what is the initiation codon in translation

A

AUG

18
Q

What are the stop codons

A

UAA
UAG
UGA

19
Q

What do u need for translation

A

template- mRNA
enzyme- rRNA in ribosomes
substrates- activated amino acids
charged tRNA

initiation factors, elongation factors, release factors and energy

20
Q

what is a charged tRNA

A

a tRNA with an amino acid attached

21
Q

Translation- initiation

A
  • recognition of cap by tRNA- Met
  • recognition of AUG by anticodon of ‘inititaion complex’
  • Initiation factors involved
  • recruitment of large ribosomal subunit (60S)
  • assembly of functional ribosome
22
Q

translation- elongation

A
  • binding of aminoacyl-tRNA in A-site
  • peptide bond formation catalysed by peptidyltransferase
  • translocation- ribosome moves one codon from 5’ to 3’
  • uncharged tRNA IN E SITE
  • elongation factors involved
  • peptidyl-tRNA in P-site and empty A site
23
Q

translation termination

A
  • peptidyl-tRNA in P site and empty A site with stopcodon
  • binding of Release factor
  • RF recognises stop codon
  • hydrolysis resulting free peptide and uncharged tRNA in P-site
  • dissociation of ribosome into subunits