Exam 3 slide flash cards
The Calvin benson cycle consist of what three phases
Carboxylation
Reduction
Regeneration
Which of the following statements about the Calvin-Benson cycle is incorrect?
a) It is used by most autotrophs to fix CO2
b) In eukaryotes, it occurs in the stroma of chloroplasts
c) It consists of 3 phases: carboxylation, reduction, and regeneration
d) It requires 2 ATPs and 3 NADPHs to incorporate one CO2 molecule
e) The enzyme RuBisCO catalyzes the addition of CO2 to ribulose 1,5-bisphosphate
d) It requires 2 ATPs and 3 NADPHs to incorporate one CO2 molecule
Explanation: The correct statement is that three ATPs and two NADPHs are used during the incorporation of one CO2 molecule in the Calvin-Benson cycle [1][2].
Which enzyme catalyzes the addition of CO2 to ribulose 1,5-bisphosphate (RuBP) in the carboxylation phase of the Calvin-Benson cycle, and what is the result of this reaction?
A) RuBisCO; formation of two 3-phosphoglycerate molecules
B) Phosphofructokinase; formation of fructose 1,6-bisphosphate
C) Pyruvate carboxylase; formation of oxaloacetate
D) Transketolase; formation of sedoheptulose 7-phosphate
A) RuBisCO; formation of two 3-phosphoglycerate molecules
Explanation: The enzyme ribulose 1,5-bisphosphate carboxylase/oxygenase (RuBisCO) catalyzes the addition of CO2 to ribulose 1,5-bisphosphate (RuBP), forming a 6-carbon intermediate that splits into 2 molecules of 3-phosphoglycerate (PGA) [1].
In the Calvin-Benson cycle, which of the following statements correctly describes the reduction and regeneration phases?
A) 3-phosphoglycerate is reduced to glyceraldehyde 3-phosphate, and fructose is produced
B) Glyceraldehyde 3-phosphate is oxidized to 3-phosphoglycerate, and glucose is produced
C) 3-phosphoglycerate is reduced to glyceraldehyde 3-phosphate, and Ribulose 1,5-bisphosphate is reformed
D) Ribulose 1,5-bisphosphate is reduced to 3-phosphoglycerate, and glucose is produced
C) 3-phosphoglycerate is reduced to glyceraldehyde 3-phosphate, and ribulose 1,5-bisphosphate is reformed
Explanation: According to the information provided, in the reduction phase, 3-phosphoglycerate is reduced to glyceraldehyde 3-phosphate. In the regeneration phase, ribulose 1,5-bisphosphate (RuBP) is reformed, allowing the cycle to repeat. Additionally, carbohydrates such as fructose and glucose are produced during these phases [1].
What other alternative CO2-fixation pathway can be used by autotrophs, and what is its key characteristic compared to the Calvin-Benson cycle?
Answer:
The Reductive TCA cycle is mentioned as an alternative CO2-fixation pathway. Its key characteristic is that it runs in the reverse direction of the oxidative TCA cycle
Which metabolic pathway shares enzymes with gluconeogenesis? [1]
A) Calvin-Benson cycle
B) Embden-Meyerhof pathway
C) Reductive TCA cycle
D) Pentose phosphate pathway
B) Embden-Meyerhof pathway
Which of the following statements about gluconeogenesis is correct?
a) Gluconeogenesis uses only carbohydrate precursors to synthesize glucose-6-phosphate
b) Gluconeogenesis shares no enzymes with the Embden-Meyerhof pathway
c) Gluconeogenesis involves the synthesis of glucose-6-phosphate from non-carbohydrate precursors
d) Gluconeogenesis requires only one enzyme specific to the pathway
*Answer: c) Gluconeogenesis involves the synthesis of glucose-6-phosphate from non-carbohydrate precursors**
Explanation:
Gluconeogenesis is the process of synthesizing glucose-6-phosphate from non-carbohydrate precursors [1]. It shares some enzymes with the Embden-Meyerhof pathway but also involves three reactions catalyzed by enzymes specific to gluconeogenesis:
- Two enzymes convert pyruvate to phosphoenolpyruvate
- One enzyme is involved in forming fructose 6-phosphate from fructose 1,6-bisphosphate
Which of the following statements about the synthesis of monosaccharides is correct?
a) Monosaccharides are synthesized without the involvement of nucleotides
b) Uridine diphosphate glucose (UDPG) is not involved in monosaccharide synthesis
c) Several sugars are synthesized while attached to a nucleoside diphosphate such as uridine diphosphate glucose (UDPG)
d) Monosaccharides are always synthesized as free molecules in the cell
The correct answer is c) Several sugars are synthesized while attached to a nucleoside diphosphate such as uridine diphosphate glucose (UDPG)
What two key components are involved in the complex process of peptidoglycan synthesis?
- In the cytoplasm:
- UDP-NAM and UDP-NAG are synthesized
- Pentapeptide (5P) is added to UDP-NAM
- UDP-NAM-5P is transferred to BP, forming Lipid I
- UDP-NAG transfers NAG to Lipid I, forming Lipid II
- Flippase flips Lipid II to the periplasmic side
- In the periplasm:
- NAG-NAM-5P is added to the end of the peptidoglycan chain
- BP flips back over to the cytoplasm [3]
Explain the role of bactoprenol phosphate (BP) in peptidoglycan synthesis.
transports NAG-NAM-pentapeptide units acoss the cell to cytoplasm
How are cross-links formed in the peptidoglycan structure?
Transpeptidation reaction occurs to form crosslinks
What multiple steps and methods contribute to the process Amino Acid synthesis?
Contributing Processes
- Inorganic nitrogen assimilation
- Sulfur assimilation
- Amino acid biosynthetic pathways
- Anaplerotic reactions
Which of the following are potential sources of nitrogen for inorganic nitrogen assimilation in cells?
a) Ammonia (NH3)
b) Nitrate (NO3-)
c) Nitrogen gas (N2)
d) All of the above
d) All of the above
Describe the two main mechanisms by which ammonia (NH3) can be incorporated into carbon skeletons during inorganic nitrogen assimilation in microorganisms. Explain how these mechanisms differ and their importance in amino acid biosynthesis
- Reductive amination
- Glutamine synthetase-glutamate synthase pathway
These mechanisms are crucial for incorporating nitrogen into organic compounds, particularly amino acids. Once ammonia is incorporated, nitrogen can be transferred to other carbon skeletons by transaminases, facilitating the synthesis of various amino acids.
Question:
Which two enzymes are involved in the process of assimilatory nitrate reduction, and what are their specific roles?
Answer:
1. Nitrate reductase: Catalyzes the reduction of nitrate to nitrite
2. Nitrite reductase: Catalyzes the reduction of nitrite to ammonia
This process allows bacteria to reduce nitrate to ammonia and then incorporate it into an organic form
Which of the following statements about nitrogen fixation is correct?
a) It is the process of reducing atmospheric gaseous nitrogen to ammonia
b) It is catalyzed by the enzyme nitrogenase
c) It is found in most bacteria and archaea
d) Both a and b are correct
e) All of the above are correct
Answer: d) Both a and b are correct
Explanation:
Nitrogen fixation is indeed the process of reducing atmospheric gaseous nitrogen to ammonia, and it is catalyzed by the enzyme nitrogenase. However, it is not found in most bacteria and archaea, but only in a few species [1].
Exam Question:
Sulfur is an essential element for microbial cells. Which of the following statements correctly describes sulfur assimilation in microorganisms?
a) Sulfur is only needed for the synthesis of amino acids
b) Sulfur is obtained exclusively from intracellular amino acid reserves
c) Sulfur is required for the synthesis of amino acids and several coenzymes
d) Inorganic sulfate cannot be used as a sulfur source by microorganisms
e) Coenzyme A does not require sulfur for its synthesis
Correct Answer: c) Sulfur is required for the synthesis of amino acids and several coenzymes
Explanation: According to the information provided, sulfur is needed for:
- Synthesis of amino acids (specifically cysteine and methionine)
- Synthesis of several coenzymes (such as coenzyme A)
Additionally, the slide mentions that sulfur can be obtained from either external sources, intracellular amino acid reserves, or inorganic sulfate [1].
(Add Clarifier)
Which of the following statements correctly describes the use of sulfate as a sulfur source in microorganisms?
A) Sulfate is reduced to SO3(2-) and then to H2S before being used to synthesize cysteine
B) Assimilatory sulfate reduction is the same as dissimilatory sulfate reduction
C) Sulfate activation does not involve the formation of phosphoadenosine 5’-phosphosulfate (PAPS)
D) Cysteine is made by combining hydrogen sulfide with alanine
Answer: A
Explanation:
The correct answer is A. According to the information provided, in assimilatory sulfate reduction, sulfate is reduced to SO3(2-) and then to H2S, which is then used to synthesize cysteine. This process involves sulfate activation through the formation of phosphoadenosine 5’-phosphosulfate (PAPS), followed by the reduction of sulfate
Question:
Anaplerotic reactions play a crucial role in cellular metabolism. Which of the following statements best describes the purpose and function of anaplerotic reactions?
a) They are responsible for breaking down complex carbohydrates into simple sugars
b) They replenish TCA cycle intermediates that are used in amino acid biosynthesis
c) They are involved in the synthesis of fatty acids from acetyl-CoA
d) They catalyze the formation of peptide bonds during protein synthesis
Correct Answer: b) They replenish TCA cycle intermediates that are used in amino acid biosynthesis
Anaplerotic reactions are essential because:
* TCA cycle intermediates are used in many amino acid biosynthetic pathways
* These reactions replenish the intermediates to maintain the cycle’s function
* They ensure a balance between the use of precursor metabolites for biomass and energy extraction [1]
What is a nucleoside? What is a Nucleotide?
Nucleoside= Nitrogenous base+ pentose sugar
Nucleotide=Nucleoside +phosphate
Question:
Which of the following processes is NOT involved in the incorporation of inorganic phosphate (Pi) through the formation of ATP?
A) Photophosphorylation
B) Oxidative phosphorylation
C) Substrate-level phosphorylation
D) Glycolysis
Answer: D) Glycolysis
Explanation: According to the information provided, inorganic phosphate (Pi) is incorporated through the formation of ATP by three processes: photophosphorylation, oxidative phosphorylation, and substrate-level phosphorylation. Glycolysis is not mentioned as one of these processes [1].
Question:
Purine biosynthesis is a complex process involving multiple molecules. Which of the following statements accurately describes this process?
a) Purine biosynthesis primarily uses three different molecules to form the final purine skeleton
b) The initial products of purine biosynthesis are deoxyribonucleotides
c) Seven different molecules contribute parts to the final purine skeleton
d) Purine biosynthesis begins with the formation of pyrimidines
Answer: c) Seven different molecules contribute parts to the final purine skeleton [1]
Explanation:
The document states that purine biosynthesis is a complex pathway in which seven different molecules contribute parts to the final purine skeleton. Additionally, it mentions that the initial products are ribonucleotides, not deoxyribonucleotides [1].
Question:
Which of the following statements about pyrimidine biosynthesis is NOT correct?
a) The process begins with aspartic acid and high-energy carbamoyl phosphate
b) Ribonucleotides are the initial products of the pathway
c) Deoxyribose forms of uracil and cytidine nucleotides are created by oxidation of ribose
d) Pyrimidines are cyclic nitrogenous bases consisting of a single ring
Answer: c) Deoxyribose forms of uracil and cytidine nucleotides are created by oxidation of ribose
Explanation: This statement is incorrect. According to the information provided, deoxy forms of uracil and cytidine nucleotides are formed by reduction of ribose to deoxyribose, not oxidation [1].
Fatty acids are synthesized from what intermediates and by what complex?
- acetyl- CoA
- malonyl-CoA
- NADPH
by
Fatty acid synthase complex
Phospholipids and Triacylglycerol are made from Fatty acids and glycerol phospahte. What intermediate is important to the formation of these compounds?
Phosphatidic Acid
7:
Question:
Lipopolysaccharides (LPS) are crucial components of the Gram-negative bacterial outer membrane. Describe the synthesis and assembly process of LPS molecules, including:
a) The two main branches involved in LPS synthesis
b) Where Lipid A is synthesized
c) The sequence of steps in LPS assembly
Answer Key:
1. Two main branches: Lipid A-core branch and O-antigen branch
- Lipid A is synthesized in the cytoplasm
- Sequence of steps:
- Lipid A synthesized in cytoplasm
- Saccharides added
- LPS flips to periplasm
- O antigen added
How does DNA appear in Bacteria ?
circular
The location in which DNA is unwound?
Replication fork
Describe the process of bidirectional DNA replication in bacteria, including:
- The shape of bacterial DNA
- The number of origins of replication
- The direction of replication
- The key structure where DNA unwinding occurs
Answer Key:
- Bacterial DNA is typically circular
- Replication starts from a single origin
- Replication proceeds bidirectionally (in both directions) from the origin
- DNA unwinding occurs at the replication fork
Question:
What is the replisome in bacterial DNA replication, and how does it function during the initiation of replication?
Answer:
The replisome is:
- A complex of 12 proteins involved in DNA replication
- Composed of two replisomes that move in opposite directions away from the origin of replication
- Includes helicase, which:
- Forms a ring that encircles the DNA
- Disrupts hydrogen bonds
- Provides the force to move the replisome along the DNA