Cytoskeleton Flashcards

1
Q

Which secretory pathway doesn’t need a signal? What types of stuff gets transported on this pathway?

A

Constitutive secretory pathway. Add receptors to plasma membrane / secreting proteins without special features

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2
Q

Which secretory pathway runs through a signal cascade? What goes through it?

A

regulated secretory pathway. Sends out secretory proteins (have signals on them).

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3
Q

What signal marker diverts proteins to lysosomes?

A

Mannose 6-phosphate.

Do receptors go to lysosomes too? check in book

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4
Q

What is another word for actin filaments?

A

microfilaments

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5
Q

How many strands to actin filaments have? What are the strands?

A

Two strands. Helical polymers of the protein actin.

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6
Q

What important thing does an actin monomer have in a central cleft?

A

ATP or ADP

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7
Q

What designates the minus and plus end of an actin filament?

A

The orientation of subunits. They all have the same orientation

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8
Q

What protein causes actin to pack tightly?

A

fimbrin. Forms parallel bundle (orientation of all filaments is the same in terms of + and -)

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9
Q

Why does fimbrin packing actin tightly matter?

A

Tight packing prevents myosin II from entering bundle

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10
Q

What protein loosens up actin?

A

a-actinin. Forms contractile bundle (orientation of actin filaments is opposite in terms of + and -)

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11
Q

If there is no actin at all, how fast will it form compared to growing pre-existing actin?

A

Slower (lag phase)

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12
Q

What is it called when actin filaments aren’t growing or contracting?

A

equilibrium phase, steady state. Happens at Cc (critical concentration)

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13
Q

What needs to happen for actin filaments to be elongated?

A

Subunits have to be above critical concentration

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14
Q

What is treadmilling?

A

Subunits are getting removed at - end

Subunits are getting added at + end

Both happens at the same rate

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15
Q

At what concentration of filaments does treadmilling happen?

A

Intermediate concentration

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16
Q

What types of subunits do actin filaments contain?

A

T form (soluble)

D form

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17
Q

T subunits are at their critical concentration

D subunits are at their critical concentration

Is there the same number of subunits?

A

No. Cc of T requires less subunits

Cc of D requires more subunits

Treadmilling happens when you’re both above the critical concentration of T and below the critical concentration of D

Why? (Read book on this)

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18
Q

Why must proteins released to extracellular space need to be soluble?

Where do these proteins come from? How are they transported?

A

Soluble because that way they can get through membrane

Come from trans golgi, transported in lipids which become part of plasma membrane.

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19
Q

Which pathway are neurotransmitters exocytosized through? Why?

A

Regulated secretory pathway.

They need to wait by the plasma membrane in secretory vesicles

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20
Q

Which pathway are most membrane lipids and membrane proteins added through?

A

Constitutive secretory pathway

Lipids come from the vesicles themselves, membrane proteins attached to vesicles during travel

21
Q

Where in relation to the ER / cytoplasm are the cisternae of the trans golgi network?

Cis golgi network?

A

Trans is closer to the cytoplasm

Cis is by the ER

22
Q

What makes up a single intermediate filament coiled-coil dimer?

A

Two dimers wrapped around each other

antiparallel (n-terminus next to c-terminus)

23
Q

What makes up a single intermediate filament? How do they grow?

A

Two coiled-coil dimers form a tetramer by lining up (c-terminus next to c-terminus, staggered)

8 tetramers line up in parallel. 32 individual a-helical coilds per filament.

To grow, another circular set of 8 filaments adds on to the end

24
Q

Where can a dense network of intermediate filaments be found? Why? What are they called?

A

Nuclear lamina (called nuclear lamins).

Anchorage site for chromosomes / nuclear pores

25
What is keratin? Where do you see it? What's it made of?
Type of intermediate filament made up of acidic + basic subunits in each coiled-coil dimer See it in hair, nails, etc
26
What is the process of actin forming its initial aggregate that can then grow called?
nucleation
27
What are the T and D forms of actin subunits?
T form = ATP inside D form = ADP inside
28
Is it harder to separate a D subunit or T subunit of actin?
D subunit. Energy of hydrolysis gets stored in polymer when ATP\>ADP
29
What form are soluble actin subunits in? Polymers?
Generally T form Polymers a mixture of T and D, but more D the longer they've existed
30
What protein causes closer packing? What is the result of that? What protein causes looser packing? What is the result?
**Closer packing:** **fimbrin**. This close packing excludes myosin, so parallel actin filaments with fimbrin can't contract **Looser packing: a-actinin**. Allows binding of myosin, sow formation of antiparallel contractile actin bundles.
31
What kinds of things do actin accessory proteins regulate?
Change formation ability (nucleation) Speed actin forms (adding to + end) Size of filament (e.g. capping protein) Stability (more or less rigid) Number of filaments Geometry (bundling, crosslinking like in neuron growth, attachment to plasma membrane)
32
What does a myosin II motor protein look like? What are the functions of each component?
heavy chain: Neck with two heads (force-generating machinery) heavy chain: Long coiled-coil (heavy-chain dimerization) light chains C terminus
33
What are multiple myosin filaments together called? What do they look like?
Myosin II bipolar thick filament Myosin tails making a fiber, heads on the outside Fiber has two parts, with heads on each side, pointed towards each other: o== ==o
34
Which direction does myosin walk along actin? How? How does this turn into myosin moving muscle?
Myosin head hydrolizes ATP Uses that energy to walk towards + side of actin Bipolar thick filament moves oppositely oriented actin filaments towards each other
35
How can small bipolar myosin filaments quickly be formed? What is the purpose of this?
Inactive myosin: light chains dephosphorylated Active myosin: light chains phosphorylated Myosin activation causes head to start binding actin, tail to start forming bipolar filaments **Purpose**: Control non-muscle contractile bundles. Give mechanical support to cells
36
What is the purpose of Myosin V? (two-headed, large step size)
Transport stuff along actin by walking along filaments towards + end
37
What direction do intermediate filament monomers assemble?
Parallel
38
How rigid is a microtubule compared to other cytoskeleton components?
More rigid than actin
39
What are the linear strings of tubulin that make up microtubules called? What are they composed of? How many are there? How are they organized?
Protofilaments ...alpha tubulin - beta tubulin - alpha tubulin... 13 make up a microtubule They connect with each other laterally to make a circle
40
What's the inside of a microtubule called?
microtubule lumen
41
Is GTP more tightly bound in a- or B- tubulin? Why does this matter?
alpha tubulin GTP can never be hydrolized to GDP in a-tubulin, only in B-tubulin
42
Why are microtubules so stiff? (same reason they only add / get removed at the ends)
Protofilaments aren't right next to each other, they're staggered a bit Because of this, each subunit has multiple connections with other subunits This makes for very high energy in the middle of microtubules
43
Which direction on a microtubule, +-, do dyneins travel?
Towards the - end
44
How fast does GTP hydrolysis occur in free B-tubulin vs B-tubulin in microtubules? If GTP is hydrolyzed to GDP, what happens to B-tubulin?
Slow in free tubulin Fast in microtubule Tubulin relaxes into curved conformation, allowing catastrophe
45
What complexes do microtubules grow from? What end of microtubule goes away from centrosome?
y-tubulin ring complexes of centrosome + end goes out
46
What is the material in the MTOC called? What is another name for it?
Material = pericentriolar material MTOC = centrosome in animal cells (one per G1)
47
What is the actual function of centrioles?
Organize centrosome matrix Become basal body of cytoskeletal apparatus in cilium / flagella
48
Where are the N- and C- terminuses of kinesin? Why is kinesin-14 different?
N-terminus: Mostly the motor domain (head) except for kinesin 14 Kinesin-14 has N terminus on opposite ends of motor domains, and goes opposite direction (towards - end)
49
What are melanocytes? Why are they important?
Pigment granules, shows that kinesins/dyneins can be controlled by hormonal changes Less cAMP = inactivated kinesin, dynein drags granules towards center (change fish color) More cAMP = kinesins (both) activated, granules spread out (kinesins stronger)