Cytology Flashcards
What is a Feulgen stain for? Color?
Nuclei (specifically DNA) stains red
What is a H&E stain for?
Nuclei (DNA), nucleoli (RNA), and basophilic structures (RNA in rER & ribosomes) stain blue
Cytoplasm and acidophilic structures (cytoplasmic proteins) stain pink
What is a hematoxylin stain for? Color?
Stains DNA (nuclei), RNA (nucleoli), and basophilic structures (ribosomes, rER) blue
What is an eosin stain for? Color?
Stains the cytoplasm and acidophilic structures (cytoplasmic proteins) pink
What is a Periodic-Acid Shift (PAS) stain for? Color?
Stains carbohydrates and carbohydrate-rich molecules red
Glycogen, starch, cellulose, mucin, collagen, cartilage-matrix, thyroid colloid
What is a Silver Impregnation for?
Stains Golgi, reticulum, nerve fibers, and cell borders of the mesothelium
What does Osmium Tetroxide stain?
Stains Golgi, myelin, and lipids
What does Methyl Green stain?
DNA stains green
What does Pyronin stain?
RNA stains red
What does Phosphotungstic Acid Hematoxylin (PTAH) stain? Color?
Stains mitochondria, nuclei, and contractile elements of striated muscle blue/purple
What is an artefact?
A flaw on a slide caused by a faulty technique
What can be used as a “ruler” when viewing cells with a light microscope?
RBCs are approximately 7-8 um
What are possible causes for an artefact?
- Postmortem degradation
- Shrinkage
- Precipitation
- Wrinkles & folds
- Nicks
- Technician handling
Four common features of cells
- Surrounded by membrane
- Have nuclei (zero for RBCs)
- Contain organelles (membrane or non-membrane bound)
- Contain inclusions (nonliving material)
Functions of the nucleus
- DNA replication (for cell division)
- DNA repair
- RNA transcription and processing
What are the three major components of the nucleus?
Nuclear envelope, chromatin, and nucleolus
Why is the evaluation of the morphology of the nucleus important?
Helps determine the health of the cell
Ex: tumor cell development
What are the key features of the nuclear envelope?
Has two unit membranes (outer and inner) 10-30 nm apart that are separated by the perinuclear cisternae and are continous with one another at the nuclear pores
Has lamin proteins near inner membrane
What is the perinuclear cisternae?
Space between the two unit membranes of the nuclear envelope (10-30 nm)
What is the difference between the inner and outer membranes of the nuclear envelope?
Inner membrane faces nuclear matrix, associates with the chromatin and is supported by the nuclear lamina
Outer membrane faces the cytoplasm, is continuous with (shares biochemical/functional properties) rER, can have ribosomes attached
Functions of the nuclear pores
Act as bidirectional gates between cytoplasm and nucleus
Allows small molecules to pass via diffusion (8-9 nm)
All proteins with a nuclear localization amino acid sequence are transported via active transport
What is the nuclear localization AA sequence?
The amino acid sequence that allows proteins to pass through the nuclear pores via active transport
Small proteins can pass through the nuclear pores via facilitated diffusion. T/F
False, proteins of all size need a nuclear localization AA sequence to pass via active transport
Structure of the nuclear pore
Two octagonal rings (cytoplasmic and nuclear) made from 8 nucleoporin (nuclear pore proteins) subunits each that form central pore (70-80 nm)
Protein filaments extend from both rings, but form basket on nuclear side (allow reactions to occur)
If you were able to inject a dye into the perinuclear cisternae where could that dye be found if it were free to move in the cisterna?
Lumen of the rER (because outer leaflet is continuous with rER, dye could move into that region)
Why do we call the boundary of the nucleus a nuclear envelope instead of a nuclear membrane?
The nucleus is surrounded by two unit membranes separated by a perinuclear cisterna (space). Therefore it is called a nuclear envelope.
What structures associated with the nuclear envelope can be seen with the electron microscope?
- Inner nuclear membrane
- Outer nuclear membrane with associated ribosomes
- Perinuclear cisternae
- Nuclear pores
- Nuclear lamina
- Continuity of the outer nuclear membrane with the rER
Functions of the nuclear lamina
- Gives shape/stability to nuclear envelope
- Links chromatin and nuclear envelope
- Holds pores in nuclear envelope
- Dissolves/reforms nuclear envelope during cell division (via phosphorylation)
- Organizes the interphase nucleus
Location and structure of nuclear lamina
Between inner nuclear membrane and heterochromatin, made lamins A, B, C (intermediate filament proteins)
What does phosphorylation of the nuclear lamins cause?
Dissolves nuclear lamina during mitosis/cell division
What are envelopathies and laminopathies?
Mutations in the proteins of the nuclear membrane or lamins
Chromatin
Complex made of DNA, histone and non-histone proteins in the nucleus of eukaryotic cells
Heterochromatin
Condensed DNA of genes that are not being transcribed, can be constitutive (never transcribed) or facultative (transcription depends on cell type)
What does heterochromatin look like in a light microscope?
Appears as basophilic clumps
Euchromatin
Uncoiled / loosely packed DNA of genes that are being transcribed
Aka extended chromatin
Nucleosome
Looks like nucleosome beads on a DNA string, is the simplest arrangement of chromatin packing in the nucleus (11 nm wide)
DNA makes 1.75 turns around 8 proteins (four histone types in pairs, called nucleosome) connected by linker DNA
30 nm chromatin fibrils
Nucleosomes coil into threads/fibrils due to different histone types binding together
300 and 700 nm chromatin fibers
The coiled 30 nm fibrils are looped into 300 nm loops, which are further coiled into 700 nm helical loops (chromosomes of metaphase)
What packaging structure is seen with a light microscope in mitotic/meiotic cells during metaphase?
700 nm chromatin fibers of condensed chromosomes
What is the order and size of the packing structures of DNA in the nucleus?
Helical DNA (2 nm) Nucleosome (11 nm) 30 nm chromatin fibrils Chromatin fibers (300 and 700 nm loops) Chromosomes (1400 nm)
Genotype
of chromosomes in somatic cells, species specific (humans = 46)
Karyotype
Standard map of the banding pattern of each chromosome during metaphase stage
Autosomes
Chromosomes that are not sex chromosomes (humans = 22)
Sex chromosomes
One pair per cell
XX or XY
Barr body
The inactive X chromosome of females
Seen as drumstick
or heterochromatin clump next to nuclear envelope in light microscope, more obvious in WBCs
Chromatid
One copy of a chromosome formed by DNA replication still joined at the centromere to the other copy
Diploid
Cells with full complement of chromosomes (humans = 46)
Haploid
Having only one of each pair, like germ cells (23)
Polyploid
Having more than one complement of chromosomes
Aneuploidy
Any deviation in the normal number of chromosomes
What are examples of aneuploidy?
Trisomy - 3rd chromosome of one type (Down’s syndrome, Klinefelter’s syndrome)
Monosomy - absence of chromsome in pair (Turner’s syndrome XO)
Nucleolus
Eccentric, not surrounded by membrane, 1-2 per cell (depends on species/activity of cell)
Site of rRNA transcription, has nucleolar organizing region
Location of the nucleolus
Eccentric circle of condensed DNA not surrounded by membrane
How many nucleoli are found in cells?
1-2 depending on species and activity of cell
Function of the nucleolus
Site of rRNA transcription primarily
Also regulates the cell cycle with nucleostemin (protein contained in nucleolus that stops G1
Nucleolar Organizing Region (nuclear associated chromatin)
10 expanded chromosomes (pairs of 5) that contain genes that encode rRNA, also helps to reorganize the nucleoli after cell division
The DNA transcription loops of the NOR chromosomes form circle that is the nucleolus
Composition of the nucleolus
Lots of rRNA and protein (basophilic)
Areas of the nucleolus
- Fibrillar center - stains pale
- Pars fibrosa - dense fibrillar region
- Pars granulosa - granular compartment
Structure of the ribosome
Large subunit - 60S, catalyzes peptide bond formation, made of 28S, 5S, and 5.8S rRNA
Small subunit - 40S, binds mRNA and tRNA in cytoplasm, recruits large subunit, made of 18S
Formation of ribosomes
In nucleolus: Nucleolar organizing DNA is transcribed to form pre-rRNA, which associates with ribosomal proteins (forms ribonucleoproteins), pre-rRNA is cleaved into 28S, 18S, and 5.8S rRNAs
In nucleus: 28S and 5.8S combine with 5S rRNA (transcribed in nucleus) to form large ribosomal subunit, then ribosomal subunits are actively transported through nuclear pores into cytoplasm
In cytoplasm: Ribosomal subunits assemble into ribosomes/polysomes with mRNA
Translation of mRNA into proteins by ribosomes takes place in nucleus. T/F
False, translation takes place in the cytoplasm
Ribosomal subunits are transported out of the nucleus with simple diffusion. T/F
False, nuclear pores use active transport to move proteins in and out of the nucleus
All rRNA are transcribed in the nucleolus. T/F
False, the 5S rRNA is transcribed in the nucleus and assembles into the large subunit in nucleus
What events of the formation of ribosomes takes place in the nucleolus?
Transcription of pre-rRNAs, association of pre-rRNAs with ribosomal proteins, and cleavage of rRNAs into 28S, 18S, and 5.8S
What events of the formation of ribosomes takes place in the nucleus?
Assembly of the 5S, 28S, and 5.8S rRNA into the large ribosomal subunit and active transport of ribosomal subunits out of the nucleus through nuclear pores
What events of the formation of ribosomes takes place in the cytoplasm?
Assembly of the ribosomal subunits into the ribosome / polysomes in association with mRNA
Four key concepts of membranes
- They are not homogenous
- Membrane components are in constant dynamic flux
- Membranes are asymmetric (outer and inner leaflet totally different)
- The shape of the surface membrane is partly determined by the underlying cytoskeleton
What nuclear components can be seen with the light microscope?
Nuclear envelope, heterochromatin, and nucleolus
Structure of the unit membrane
Trilaminar structure (3 distinct layers) when viewed with EM (outer and inner leaflet electron dense)
What substance is responsible for half of the mass of membranes?
Lipids
What is the function of lipids in the membrane?
Responsible for membrane form and permeability
What is the most abundant type of lipid in the membrane?
Phospholipids
What is the second most abundant type of lipid in the membrane?
Cholesterol
What is the function of cholesterol in membranes?
Maintains the structural integrity
What is the third most abundant type of lipid in membranes?
Glycolipids
Where are glycolipids always found in membranes?
Outer leaflet
Order the three most common lipids found in membranes from most abundant to least abundant
Phospholipids > cholesterol > glycolipids
What is the function of proteins in membranes?
Give the membrane its specific functions
What type of molecules are permeable to the unit membrane? What type aren’t?
Small hydrophobic (oxygen, CO2, nitrogen, and benzene) and small, uncharged, polar molecules (water, urea, glycerol) are permeable
Large, uncharged, polar molecules (glucose, sucrose) and ions (H+, HCO3-) are not permeable
How is the presence of membrane proteins indicated?
Using the freeze fracture technique
What are common specific functions of membrane proteins? (6)
Enzymes, channels, receptors, cell-cell recognition, intercellular junctions, bind to cytoskeleton/ECM
Where are carbohydrates located on the unit membrane?
Outer leaflet
What does the carbohydrate component of the membrane contribute to?
Glycocalyx
What is the function of the glycocalyx?
Cell recognition
What is the structure of the glycocalyx?
Made of glycolipids and glycoproteins coated in carbohydrates
Lipid raft
Floats in plasma membrane and groups proteins that need to interact together
Has a specialized membrane domain (longer phospholipid tails, so only proteins with long transmembrane domains can enter)