CLINICAL SPECIMENS Flashcards
Temperature sensitive
N. meningitidis; Haemophilus
Anticoagulant for Blood Culture
0.025% SPS
Not to be used in Microbiology
EDTA & CITRATE
Common pathogens of CSF
IMP
H. influenza,
N. meningitidis
S. pneumoniae
Media for urine spx
Blood agar plate / MacConkey
Major cause of UTI:
E.coli
Suprapubic aspirate is for
anaerobic culture
Suitable preservative for urine spx
boric acid
Considered significant urine value
> 100,000
for UTI / >50,000 CFU/ml
Considered NOT significant urine value
<10,000 CFU/ml
Blood Culture dilution factor:
1 : 10
Blood Culture media
BHI broth ( conventional 7- 10 days)
automated : 3 - 5 days of result
Oxidase (+)
ViCAP
Vibrio
Campylobacter
Aeromonas
Plesiomonas
Oxidase (-):
SaShi
Salmonella
Shigella
Media for stool
MAC, BAP, SSA, TCBS, APW, HEA, Selenite F broth
causes neurodegenerative diseases
Prions
Non-lipid viruses
RhiPoCo
Rhinoviruses
Polio
Coxsackie
Fungi
CanCry
Candida, Cryptococcus
Steam under pressure
autoclave
Tyndallization, sporicidal, Intermittent Sterilization
Arnold Sterilizer
Thickening thru evaporation
Inspissation
checks efficacy of autoclave
Kilit Ampule
indicates well maintained autoclave
Black
need maintenance
Half gray
Pasteurization
Low Temperature Holding
30 mins at 63-65C
High Temperature Short Time
15 secs at 72C
Ultra High Temperature
3-5 secs at 140C
Oven
1 hr & 30 mins to 2 hrs at 160-180C
QC strain for Oven
Bacillus Subtilis
Incineration
300-400C
Ethylene Oxide
Kills microbes and endospores; highly penetrating
4 to 18 hours
Radiation
Ionizing radiation
Short wavelengths (less than 1 nanometer)
UV light rays
Wavelength longer than 1 nm
Microwave radiation
Wavelengths ranges from 1 mm to 1 meter
sterilize heat labile substances such as serum, plasma and certain carbohydrate solution, enzymes, vaccines, antibiotic solutions
Filtration
Best to preserve culture; water is removed by high vacuum
Lyophilization/Freeze Drying
Osmotic pressure
Preserve foods
Most resistant: yeasts and molds
sporocidal
Iodophor
Sterilant; Less irritating and more effective than HCHO
Glutaraldehyde
Commonly used as formalin, a 37% aqueous solution.
Formaldehyde
Commonly used as formalin, a 37% aqueous solution.
Formaldehyde
used extensively to preserve biological specimens and inactivate viruses and bacteria in vaccines
formalin
Used to kill algae in pools and fish tanks
Copper
used in shampoo; Kills fungi and spores
Selenium
used as antifungal in paints
Zinc oxide
used in mouth wash
zinc chloride
Effective in disinfection of inanimate objects.
Sporicidal at higher temperatures.
used also cleaning for contact lens
H2O2
More effective killing agent than chlorine, but less
stable and more expensive
Ozone
can kill the bacteria less than 5 mins
spores/ viruses : 30 mins
Oxidizing Agents
One of the most effective liquid sporicides
Used widely in disinfection of food and medical instruments because it does not leave toxic residues
Peracetic acid
acne medications
Benzoyl Peroxide
Skin irritant and has a strong odor
Stable, persist for long time after application
standard disinfectants
Phenols
QUATS
Quaternary Ammonium Compounds
mostly seen in WIPES or Dishwashing Liquids, air refresher soap
QUATS
Disinfectant with antimicrobial efficacies
Cannot mix with bleach
Effective against gram positive bacteria, less effective against gram-negative bacteria
Also destroy fungi, amoebas, and enveloped viruses
Ex. Zephiran (benzalkonium chloride)
QUATS
Technique for Antimicrobial Susceptibility Testing (AST)
Kierby Bauer Technique (Qualitative Method)
AST medium
Mueller Hinton Agar (MHA)
lowest concentration of antimicrobial agent in ug/mL that prevents the in vitro growth of bacteria
Minimal Inhibitory Concentration (MIC)
Medium for Minimal Inhibitory Concentration (MIC)
MH broth (liquid) or BHI broth
resistant to all beta lactams
cefoxitin disk performs better than the oxacillin disk in detecting oxacillin-resistant staphylococci by the disk diffusion
MRSA (Oxacillin)
Positive D zone test:
flattening zone around Clindamycin
Negative D zone test:
resistance in Erythromyacin but sensitive in Clindamycin
ESBLs
Extended Spectrum Beta Lactamases
they are all resistance in cephalosporins, aztreonam and penicillin
ESBLs
known as DOUBLE DISK synergy test
Key Hole test
Positive MODIFIED HODGE TEST
formation of clover-leaf pattern
Negative MODIFIED HODGE TEST
no formation of clover-leaf pattern
producing Enterobacteriaceae
Carbapenemase (CPE)
MALDI-TOF MS
Matrix-assisted Laser Desorption Ionization Time of Flight Mass Spectrometry
direct identification of bacteria from blood culture broths
MALDI-TOF MS
Protecting people from dangerous pathogens
Laboratory Biosafety
Protecting the pathogens from dangerous people
Biosecurity
Biosafety Level 1
minimal risk ( subtilis )
Biosafety Level 2
moderate risk ( e coli and salmonella)
Biosafety Level 3
serious/ lethal (brucella, MTB)
Biosafety Level 4
aerosol / fatal ( no treatment) e bola and lassa virus
Biosafety Cabinets Class I
exhaust air thru hepa filter (no product protection)
Commonly used for mixture of reagents
Biosafety Cabinets Class II
exhaust and recirculated air thru hepa filter with product protection
Biosafety Cabinets Class IIa
exhausts air inside the room 70% of air is recirculated; 30# is exhausted
Biosafety Cabinets Class IIb
exhausts air outside the building
MUST for Microbiology lab hospitals
Biosafety Cabinets Class III
enclosed; air circulating inside the workstation has already been filtered