Chapter 5c: Regulation of Gene Expression Flashcards

1
Q

A given cell transcribes only a specific set of __ and not others (i.e. Insulin is made by pancreatic cells)
* Therefore, gene products should be released at the __ __, in the __ __, and in the __ __

A
  • genes
  • right time
  • right place
  • right amounts
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1
Q

Gene regulation occurs primarily at the level of __ or production of __

A
  • transcription
  • mRNA
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2
Q

What is the primary purpose of gene regulation in prokaryotes? (2)

A
  • growth
  • response to environment
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3
Q

Who proposed the operon model and when?

A

Francis Jacob and Jacques Monod proposed the operon model in 1961.

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4
Q

a cluster of genes encoding related enzymes that are regulated together.

A

operon

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5
Q

Gene control that involves an inhibitor (repressor) that keeps transcription turned off until an anti-inhibitor called inducer turns the system on.

A

Negative regulation

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6
Q

Gene control that involves an effector molecule (protein, small molecule, or molecular complex) that activates a promoter.

A

Positive regulation

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7
Q

Two Categories of Gene Control (2)

A
  • Negative regulation
  • positive regulation
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8
Q

Two Types Of Proteins In Bacterial Cells (2)

A
  • structural proteins
  • regulatory proteins
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9
Q

a protein that do not regulate transcription. Examples include enzymes, membrane proteins, and ribosomal components.

A

structural proteins

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10
Q

Examples of structural proteins (3)

A
  • enzymes
  • membrane proteins
  • ribosomal components.
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11
Q

A protein that helps sense the environment and regulate the rate of transcription of structural genes by binding to DNA.

A

regulatory proteins

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12
Q

In which organism has gene regulation been well studied?

A

E. coli

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13
Q

What does a bacterial cell do when it encounters a potential food source?

A

It manufactures the enzymes necessary to metabolize that food.

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14
Q

Who studied the ability of E. coli to digest lactose and when?

A

Jacques Monod and Francois Jacob studied this in 1959.

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15
Q

What enzyme does E. coli make in the presence of lactose?

A

Beta-galactosidase.

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16
Q

What is the function of beta-galactosidase?

A

breaks down lactose so E. coli can digest it for food.

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17
Q

Which gene in E. coli codes for beta-galactosidase?

A

LAC Z gene

18
Q

Why does E. coli not produce beta-galactosidase in the absence of lactose?

A

no point in making the enzyme if there is no lactose to break down

19
Q

a set of genes in E. coli that are involved in the metabolism of lactose.

A

lactose operon

20
Q

What genes are included in the lactose operon? (3)

A
  • lacZ gene
  • lacY gene
  • lacA gene
21
Q

regulated by a repressor protein that binds to the operator region, preventing transcription when lactose is not present.

A

lactose operon

22
Q

Lactose operon: When __ is present, it binds to the __, causing it to change __ and __ from the operator, allowing transcription of the operon genes.

A
  • lactose
  • repressor
  • shape
  • release
23
Q

The lac operon promoter sequence is __/___, which is a weak promoter with a basal expression level.

A

TTTACA/TATGTT

24
Where is the CRP (cAMP receptor protein) binding site located?
-60 region of the lac operon
25
a homodimeric protein with binding ability to DNA and cAMP.
CRP (cAMP receptor protein)
26
enhances gene expression by binding to the CRP binding site and promoting transcription initiation at the lac operon promoter.
cAMP-CRP
27
the repression of certain sugar-metabolizing operons in favor of glucose utilization.
Catabolite repression
28
Which operons are affected by catabolite repression? (5) What is needed to turn on these operons?
- maltose - sorbitol - lactose - arabinose - galactose metabolism - cAMP
29
cAMP binds to the __ __ __ (__), forming __-__ __, which then enhance gene expression by binding to specific sites in the promoter regions of the operons.
- cAMP receptor protein (CRP) - cAMP-CRP complexes
30
How is cAMP formed: __ __ catalyzes the conversion of ATP to cAMP and pyrophosphate (PPi).
Adenylyl cyclase
31
Glucose reduces the level of cAMP by inactivating __ __.
adenylyl cyclase
32
__ glucose levels lead to low cAMP levels, resulting in the repression of other operons.
High
33
a set of genes in E. coli responsible for synthesizing the amino acid tryptophan.
Tryptophan operon
34
Why do E. coli cells need tryptophan?
for protein synthesis
35
What happens when E. coli is swimming in tryptophan-rich medium?
absorbs tryptophan instead of synthesizing it
36
How many genes are involved in manufacturing tryptophan in E. coli?
A cluster of 5 genes
37
The trp operon is constitutively expressed at the __ __, meaning it is always being transcribed at a __ level regardless of the presence of tryptophan.
- basal level - low
38
Properties of Acetylated Histones (2)`
- Less positively charged - Chromatin is less condensed
39
__ is a chemical modification of histones in genomic DNA that regulates DNA action, often referred to as an epigenetic mechanism.
Acetylation
40
Acetylation of histones, particularly lysine residues on __ __ and __, unfolds __, making DNA more accessible for transcription.
- histones H3 - H4 - chromatin
41
__ of nucleotides, often on cytosine residues, favors chromatin condensation and leads to inactive DNA, thereby regulating gene expression.
Methylation
42
__ patterns can be passed down generationally, influencing gene expression and potentially contributing to inherited traits and diseases.
Methylation