Chapter 5c - Regulation of Gene Expression Flashcards
virtually every cell in your body contains a __ __ of genes
complete set
genes are not all __ __ in every tissue
turned on
each cell in the body expresses only how many genes at any time
small subset
during development, what do different cells express
different set of genes in precisely regulated fashion
where does gene regulation primarily occur
transcription
a given cell transcribes only a __ __ of genes and not others
specific set
Gene products should be released at the ….
right time, right place, right amounts
Gene regulation in prokaryotes are mainly for
- growth
- response to environment
- cluster of genes that are transcribed together to give a single messenger RNA (mRNA) molecule, which therefore encodes multiple proteins
- cluster of genes encoding related enzymes that are regulated together
operon
who coined the term operon
- Francis Jacob
- Jacques Monod
1961
where do operons mostly occur
prokaryotes
Two Categories of Gene Control
- Negative regulation
- Positive regulation
- an inhibitor (repressor) is present in the cell that keeps transcription turned off
- an anti-inhibitor (inducer) is needed to turn the system on
negative regulation
inhibitor
repressor
anti-inhibitor
inducer
an effector molecule which may be a protein, small molecule or a molecular complex activates a promoter
positive regulation
Two types of Proteins in Bacterial Cells
- Structural proteins
- Regulatory proteins
do not regulate transcriptio
structural proteins
ex. of structural proteins
- enzymes
- membrane proteins
- ribosomal components
help sense environment and regulate rate of transcription of structural genes by binding to DNA
regulatory proteins
- contains genes involved in lactose metabolism
- It’s expressed only when lactose is present and glucose is absent
lactose (lac) operon
parts of the lac operon
- P (promoter)
- O (operator)
- Z
- Y
- A
structural loci of lac operon
- Z
- Y
- A
Z is the structural gene for what?
beta-galactosidase
Y is the structural gene for what?
beta-galactosidase permease
A is the structural gene for what?
beta-galactosidase transacetylase
lactose is absent, __ __, __ __
- repressor active
- operon off
lactose present, __ __, __ __
- repressor inactive
- operon on
what type of promoter is lac operon
weak
expression level of lac operon
basal
binding site of lac operon
-60 region
name of binding site of lac operon
CRP (cAMP receptor protein) site
CRP
cAMP receptor protein
effect of cAMP-CRP on gene expression
enhancing effect
cAMP
cyclic adenosine monophosphate
what are the operons repressed in the presence of glucose
- maltose
- sorbitol
- lactose
- arabinose
- galactose
what is needed to turn on the sugar-metabolizing operons
cAMP
when glucose levels are low, __ is produced. It attaches to __, allowing it to bind DNA. Then it helps ____ bind to the promotor, resulting in high levels of transcription
- cAMP
- CRP
- RNA polymerase
in low glucose, what is the rate of transcription
high
when glucose levels are high, __ __ is made. __ can’t bind to DNA without it, so transcription occurs only at a low level
- no cAMP
- CRP
in high glucose, what is the rate of transcription
low
cAMP formation
ATP –> (adenylyl cyclase) cAMP + Ppi
how does glucose reduce levels of cAMP
inactivating adenylate cyclase
one of the constitutive genes expressed at the basal level
tryptophan (trp) operon
gene that is transcribed continually
constitutive gene
what does the trp operon produce
polypeptides that make up enzymes of tryptophan synthesis
tryptophan absent, __ __, __ __
- repressor inactive
- operon on
tryptophan present, __ __, __ __
- repressor active
- operon off
eukaryotic gene regulation
epigenetic mechanisms
highly condensed, gene-poor, and transcriptionally silent
Heterochromatin
less condensed, gene-rich, and more easily transcribed
Euchromatin
regions with high transcriptional activity are loosely packed
acetylation
regions with low or no transcriptional activity are densely packed
methylation
What are the Epigenetic Mechanisms
- acetylation
- methylation
transcriptional activation
histone acetylation
gene silencing
histone deacetylation
DNA coiled = ?
turned OFF
what does acetylation unfold
chromatin
histones that unfold chromatins
H3 and H4 histones
favors condensation and leads to inactive DNA once CH3 is passed generationally
methylation of nucleotides