chapter 15/16 study questions Flashcards
examples of genotypic methods of identification
PCR and DNA sequencing
advantages of genotypic methods
affordable, fast, better patient outcome
agglutination is an __________ method
immunologic
examples of phenotypic
optimal pH for growth
enzymatic growth
susceptibility to tetracycline
currently, ______ methods are being used exclusively as a means to identify bacteria
genetic
what is not an advantage of genotypic methods
does not require sophisticated equipment of traingin
performing an assay for the presence of oxidase or determining susceptibility to antibiotics are _______ methods of bacterial identification
phenotypic
undesirable contaminant b/c of its large normal biota
saliva
common sampling sites
vein
mouth
throat
skin
aseptic technique to obtain a urine sample
catheter
washing the external urethra and collecting urine midstream is known as
clean catch
methods to collect saliva or mucus samples from oral and nasal cavities
expectoration
discharge by coughing
swabs
blood, tissue fluid, and CSF are considered
sterile
what is one of the most rapid ways of determining the general characteristics of a specimen
microscopic observation
best way to distinguish streptococcus from micrococcus
catalase assay
selective media should be used to enrich a patient sample for a suspected pathogen when _______
the pathogen is present in small numbers
the normal biota will grow faster then the pathogen
physiological reactions to nutrients and other substrates provide indirect evidence of the types of ________ expressed in a particular species
enzymes
best way to distinguish Neisseria from staphylococcus is
gram stain
The MGIT system is a phenotypic method used to detect
growth of mycobacterium tuberculosis
in differential media, the presence of an enzyme in an organism is often visualized by a change in
color of medium
biochemical testing to detect the presence of an enzyme is performed using
the enzyme substrate conjugated to a dye
tuberculosis needs MGIT system b/c
it is slow to grow in a lab
which microbes require the inoculation of cell culture to be cultivated in the lab?
Chlamydia
Influenza
Rickettsia
testing that is based on visualization of a specific antibody-antigen reaction, where the use of a known antigen can identify the presence of an unknown antibody, vice versa
serological testing
which of the following bacteria require the inoculation of specific animals for the microbes to be cultivated in the lab?
Mycobacterium leprae
Treponema tuberculosis
when the antigens are whole cells or organisms, antigen-antibody is observed as ________ in immunologic testing
agglutination
the formation of an insoluble aggregate when an antibody combines with a soluble antigen is termed
precipitation
what test matches with Weil-Felix test for rickettsial infection
agglutination
ABO blood typing is accomplished using a _______ test
agglutination
immunochromatography (lateral flow test) is often used for
point of care strep tests and rapid preg tests
technique that utilizes antigen-antibody reactions to cell parts such as flagella, cell wall capsules to group bacteria into categories
serotyping
immunologic method often used to differentiate between strains of salmonella, pneumococcus, streptococcus
serotyping
what diseases are diagnosed by determining antibody titer in the serum?
HINT: autoimmune diseases
lupus
rheumatoid arthritis
test that involves the separation of proteins in a gel, followed by immunoassay to detect the presence of specific protein antigens, is called
western blot test
in immunofluorescence testing, fluorescent ___ is combined with specific antibody to provide a sensitive test for the presence of a specific antigen or antibody
dye
test that uses fluorescent labeled antibodies to determine the presence of a specific microbe in a specimen, is called the ________ immunofluorescent test
direct
a test that employs an enzyme-antibody complex that can be used to produce a visual color change, indicating an antibody-antigen reaction, is called __________; is visualized with color change in substrate
ELISA
steps of Western Blot
electrophoresis of sample
transfer to a filter
incubation with radioactive or fluorescent labeled antibodies
Indirect ELISA detects ______ in a sample; DIRECT ELISA detects unknown ________ in a sample
antibody
antigen
what test is used to verify false positives in indirect ELISA test?
western blot
steps of indirect ELISA
- known antigen is adsorbed to surface of wall
- serum sample with unknown antibodies is added
- enzyme-antibody complex that is specific for Fc portion of antibody is added
- substrate for the enzyme is added
- color changes in well are observed
examples of in vivo test
allergen skin test
tuberculin test
which characteristic of an immunologic test insures that it will have a lot rate of false-positives?
specificity
indirect ELISA is commonly used to test for
helicobacter
hep a and c
rickettsias
HIV
PCR test that used fluorescent labeling during DNA amplification is
real time
rPCR
technique that matches complementary strands of nucleic acid to locate specific sites or types of nucleic acid is
hybidization
application of fluorescently labeled PROBES to intact cells within a pt specimen is known as _______ technique
FISH
microarrays for infectious disease diagnostics are chips that contain _____ from possible infectious agents
gene sequences
whole genome sequencing involves
sequencing nucleic acids from patient samples
PFGE advantage
accuracy in assessing microbial subtype
whole genome sequencing is particularly useful for rapid analysis of
drug resistant organisms
disease outbreaks
advantaged of labs on chips
can be used by technicians with little specialized training
require few supplies
________ is becoming common in many clinical laboratories for the identification of microbes b/c it can provide, rapid, precise, and cost-effective results
mass spec
lab on a chip tests
DNA and RNA sequencing and PCR
MALDI-TOF
mass spec
antibiotic testing (new testing method)
test host cells for seven genes in response to infection by bacteria (they express genes) BUT will NOT express genes for viruses
components of integ
hair
sweat and oil glands
skin
nails
bottom layer of cells in epidermis
stratum basale
bas= basement
list some components of dermis
nerves
blood vessels
lymphatic vessels
collagen fibers
separation of dermis and epidermis =
blister
___ charged antimicrobial peptides of the skin can disrupt the ___ charged membranes of bacteria to prevent infection
+
-