Ch 6 and Ch 8 Flashcards

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1
Q

metabolic pathways

A

produce energy through chemical ractions

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2
Q

catabolic pathways

A

degrade complex molecules, break their bonds for energy

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3
Q

anabolic pathways

A

build complicated molecules, consume energy and store in the bonds

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4
Q

bioenergetics

A

how energy flows through living systems

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5
Q

kinetic energy

A

moving energy that can produce work, when molecular bonds are broken

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6
Q

chemical potential energy

A

resting energy that is being stored, when molecular bonds are created and energy is stored in them

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7
Q

isolated system

A

can’t exchange energy with its surroundings

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8
Q

open system

A

exchanges energy with its surroundings

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9
Q

why cells are open systems

A

they absorb light and chemical energy, release heat and metabolic waste

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10
Q

first law of thermodynamics and biology

A

byproducts of cell metabolism increase entropy

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11
Q

free energy change

A

free-energy is what does the work when temperature and pressure are uniform, responsible for spontaneous changes

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12
Q

free energy and reactions

A

in order for the reaction to be spontaneous, the change in free energy must be negative; free energy tells us if a reaction can occur spontaneously this way

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13
Q

exergonic

A

when change in free energy is negative and spontaneous reactions can occur; the change in G is the maximum amount of work the spontaneous reaction can do

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14
Q

endergonic

A

absorbs free energy from the environment; when change in free energy is stored and positive

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15
Q

metabolism and equillibrium

A

living things must always be an open system that is in disequillibrium

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16
Q

cellular work

A

is powered by ATP and the progression of exergonic and endergonic reactions; the hydrolysis of ATP produces heat and proteins use energy to do work

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17
Q

work that proteins can do when given energy from ATP

A

chemical work, transport work, mechanical work

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18
Q

protein chemical work

A

if the change in free energy of the chemical relationship is less than the energy from the ATP, the chemical relationship’s bonds are broken

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19
Q

protein transport work

A

ATP changes the shape of the proteins so it can bind to other molecules,transports solutes through the transport proteins

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20
Q

ATP/ADP cycle

A

starts as ADP, adds a phosphate and produces water; when need energy, breaks bond of third phosphate, releases energy, and becomes ADP again

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21
Q

protein mechanical work

A

ATP changes the shape of the proteins so it can bind to other molecules, makes motor proteins move

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22
Q

role of enzymes

A

speeds up hydrolysis and bonding of chemicals as a catalyst; reusable

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23
Q

activation energy and chemical reactions

A

to break bonds it requires a certain amount of energy called activation energy; frequently the activation energy is absorbed as thermal energy

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24
Q

activation energy and enzymes

A

enzymes lower the amount of activation energy required by making the reaction occur more easily

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25
Q

enzyme specificity

A

enzymes only react with their designated substrate like a puzzle piece

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26
Q

induced fit model

A

as substrate approaches the enzyme, the enzyme moves around the substrate to make a snug fit and catalyze better

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27
Q

how enzymes lower the required activation energy

A

provides a template for molecules to fit together, stretches the bonds so easier to break, optimal reaction environment

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28
Q

how to increase the digestion of substrates with enzymes

A

must add more enzymes to increase rate (assuming correct pH and temperature)

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29
Q

enzymes and temperature/pH

A

each enzyme has an optimal pH and temperature, outside of that it doesn’t do its job well or eventually denatures

30
Q

enzyme cofactors

A

perform crucial catalyst functions alongside the enzyme

31
Q

enzyme inhibitors

A

competitive inhibitors look like the substrate and clog the enzyme; noncompetitive inhibitors impede reactions while bound elsewhere to the enzyme

32
Q

allosteric regulation

A

uses reversible enzyme inhibitors to block enzymes when need to lower the metabolism of a substrate

33
Q

cooperativity of an enzyme

A

when an enzyme has multiple sites for reactions, when one substrate locks in to a site, more are attracted to the other sites

34
Q

feedback inhibition

A

when an enzyme is over catalyzing the end product of the catalyst reaction will stay inside the enzyme to block further reactions

35
Q

autotrophs

A

make own food

36
Q

heterotrophs

A

consume products made by other organisms

37
Q

mesophyll

A

the tissue in the interior of the leaf that contains chloroplast

38
Q

stomata

A

cells on the exterior of the leaf where CO2 and oxygen are exchanged

39
Q

stroma

A

the inner liquid of the chloroplast, held in by an inner and outer chloroplast membrane

40
Q

thylakoid

A

membrane system where chlorophyll is embedded, stacks of thylakoids are called grana, and the inside of a thylakoid is hollow called the thylakoid space

41
Q

chlorophyll

A

found in membrane of thylakoid, green pigment that absorbs light for photosynthesis

42
Q

photosynthesis equation

A

6CO2 + 6H2O + Light —> C6H12O2 + 6O2

43
Q

two stages of photosynthesis

A

light reactions and calvin cycle

44
Q

light reactions

A

photosystem two and one. splits water to stabilize PSII electrons while H+ powers ATP synthase and PSII electrons stabilize PSII electrons. bonds NADPH. O2 is released

45
Q

calvin cycle

A

uses energy from ATP and NADPH to take the CO2 and make the organic glucose

46
Q

carbon fixation

A

when CO2 is used to make an organic molecule

47
Q

light wavelength and light energy

A

the shorter the wavelength, the higher the energy; violet has the shortest wavelength and red has the highest

48
Q

absorption spectra

A

show how a pigment absorbs each wavelength

49
Q

action spectrum

A

shows rate of photosynthesis for different wavelengths; doesn’t totally match absorption spectra due to accessory pigments’ role; needs spectrophotometer

50
Q

the pigments of plants

A

chlorphyll a is the primary pigment, chlorophyll b is the accessory pigment, accompanied by carotenoid accessory pigments

51
Q

accessory pigment roles

A

absorb other wavelengths to photosynthesize, but not as effectively as the primary pigment would

52
Q

structure of a photosystem

A

chlorophyll absorb light and excite electrons that eventually excite the special pair of chlorophyll a molecules that send electrons to the primary electron acceptor

53
Q

where the light reactions occur

A

in the photosystems nested in the thylakoid membrane, thylakoid space and stroma

54
Q

where the calvin cycle occurs

A

the stroma

55
Q

parts of the chloroplast

A

mesophyll cells: where chloroplasts are; stomata is where water and CO2 are intaked

56
Q

chemiosmosis

A

the process of H+ protons moving across a gradient to make ATP in photosynthesis and in cellular respiration

57
Q

needed materials for light reactions

A

water, ADP, chlorophyll A, light, cytochrome complex, ATP synthase, NADP+ reductase, NADP+, protons

58
Q

needed materials for calvin cycle

A

RuBP, CO2, rubsico enzyme, 9 ATP, 6 NADPH

59
Q

light reactions products

A

H+, ATP, NADPH, oxygen gas

60
Q

calvin cycle products

A

one G3P molecule, ADP, NADP+

61
Q

photorespiration

A

when CO2 stops coming in the leaf and rubisco fixes oxygen gas rather than co2 to start calvin cycle

62
Q

problems with photorespiration

A

uses ATP instead of making it, decreases output by releasing organic molecules as CO2

63
Q

chemoautotrophs

A

make own energy from thermal energy, under water near thermal vents

64
Q

examples of photosynthesis autotrophs

A

bacteria, protists, plants, NOT fungi

65
Q

how water gets to chloropyll

A

from roots to xylem, through adhesion and cohesion, gets to the vain of leaf

66
Q

how CO2 gets into the cell

A

the cells on the surface absorb water and buckle to make a hole (aka the stomata) for the CO2 to enter

67
Q

cytochrome complex

A

carrier proteins for electrons

68
Q

why leaves turn red/brown

A

chlorophyll stops being made, so the secondary pigments that have always been there are now needed to photosynthesize and red/brown is reflected

69
Q

C3 vs C4

A

C3 is regular photosynthesis; C4 opens stomata quickly and periodically during the day; photosynthetic layers are closest to veins to be close to water; stores CO as an acid

70
Q

C4 vs CAM

A

CAM only opens at night and stores CO2 at night so doesn’t have to open the stomata, then uses CO2 in light reactions during the day

71
Q

carbon fixation three stages

A

carbon fixation, reduction, regeneration