Biology Flashcards
PCR is short for
Polymerase chain reaction
PCR what does it actually mean?
itβs a chain reaction (exponential multiplication) only of a fragement
Where is a PCR performed?
in a tube in a thermal cylinder in the lab
what components are needed for a PCR ?
original DNA (we want to copy) free floating nucleotides primer DNA polymerase
anology of original paper
original DNA (we want to copy)
anology of new paper and ink
free floating nucleotides
anology of bookmark
primer
anology of copying machine
DNA polymerase
what are the steps of PCR ?
- Denaturation 2. Hybridisation (or annealing) 3. Synthesis (or extension)
What is a primer for?
- it helps the polymerase to attach to the DNA ( a polymerase can attach to dsDNA only) 2. It marks the starting point of replication
why do we need two different primers?
we need a bookmark for start and stop (if not we would read forever ;)
Why perform a PCR ?
Copying DNA millionfold, so it gets visible to the human eye
how many DNA strands in a cell?
46 chromosomes = 46 double DNA strands
what is the aim of DNA-replication?
to create ONE identical copy of DNA
Helicase
unwinding & seperating the DNA-strands
DNA-Polymerase III
adding & binding nucleotides (continuous replication) -> nucleotides must be complementary
Primase
creates primers (so polymerase III can attach)
DNA-Polymerase III (2)
adding & binding nucleotides (discontinuous replication) -> formation of socalled OKAZAKI-fragments
Ligase
linking the OKAZAKI-fragements
nucleotide

hydrogen bonds

nitrogenous base

DNA
Deoxyribo Nucleic Acid
what is the name of the sugar group?
(deoxy) ribose
Base A
and Nucleotide A
Adenine
Adenosine
Base T
and Nucleotide T
Thymine
Thymidine
Base G
and Nucleotide G
Guanine
Guanosine
Base C
and Nucleotide C
Cytosine
Cytidine
which bases pair together?
A = T
G (3) C
3 ways to copy DNA
- PCR
- Transcription
- Replication
what happens during PCT?
a fragment of the DNA is copied millionfolds
aim/result of PCR
millions of DNA fragments
-> make DNA visible to the human eye
what happens during Transcription?
copy of 1 gene
-> mRNA
Translation
-> a protein
product for the cell & the organism
what happens during replication?
copy the whole DNA 1x
aim/ result of DNA Replication
2 identical sets of DNA
-> cell replication
the organisation of DNA
- phosphate group
- sugar group
- nitrogenous base
- nucleotide
DNA organisation: Back Bone
consist of
- Phosphate group
- sugar group
all enzymes for DNA-replication
- helicase
- polymerase III (continous and discontinous replication)
- primase
- Ligase
definition of an enzyme
a substance produced by a living organism which acts as a catalyst to bring about a specific biochemical reaction.
Steps of PCR
function of 1. Denaturation
0Β°-> 90Β° degrees spliting up DNA strand
Steps of PCR
function of 2. Hybridisation
2 Primers attach to the DNA 70Β° degrees
Steps of PCR
function of 3. Synthesis
polymerase can add and bind nucleotides
Gene structure and protein synthesis:
exon
gene sequence containing information (which will be translated)
Gene structure and protein synthesis:
T/A -rich region /enhancer
responsible for reading frequency
how much?
Gene structure and protein synthesis:
intron (red part of Gene structure)
sequence without information
Gene structure and protein synthesis:
UTR: 3β or 5β
untranslated region
Gene structure and protein synthesis:
splicing
removal of introns from the pre-RNA (remove th ered part)
from pre-mRNA
to mRNA
4 main differences between DNA and mRNA
1.
- length:
DNA: long strands 1000s of genes
mRNA: short strands, copy of one gene
4 main differences between DNA and mRNA
2.
2. Bases
DNA: G,C,A,T
mRNA: G,C,A,U
in mRNA tymine is replaced by Uracil
4 main differences between DNA and mRNA
3.
3. Sugar
DNA: deoxyribo (oxygen lacking)
mRNA: ribose
4 main differences between DNA and mRNA
4.
4. Strands
DNA: double stranded (-> stable, protected)
mRNA: single stranded (-> not very stable, want to read the information only one way use, shortly used)
From DNA to RNA
promoter
specific nucleotide sequence of DNA, where RNA-polymerase binds and STARTS transcription
From DNA to RNA
termination signal
specific nucleotide sequence of DNA, marking the END of a gene
From DNA to RNA
RNA-polymerase
enzyme that creates an RNA-strand complementary to a DNA-strand
3 types of RNA and their function
- messenger RNA (mRNA)
- ribosomal RNA (rRNA)
- transfer RNA (tRNA)
messenger RNA (mRNA)
copy of one gene, carrying the instructions of a protein
ribosomal RNA (rRNA)
part of the enzymatic complex responsible for producing proteins
transfer RNA (tRNA)
transfer amino acids in the cell
From DNA to RNA
processes 1-3
- Initiation
- Elongation
- Termination
From DNA to RNA
- process
- Initiation
Polymerase attaches to promoter and unwinds the dsDNA
From DNA to RNA
- process
- Elongation
the RNA-polymerase complements the DNA- sequence with RNA nucleotides and links them
From DNA to RNA
- Process
- Termination
the newly formed RNA is released Polymerase detaches from the DNA-strand
Recognition of a gene
A gene has the following characteristics
- direction 5β-> 3β
- start codon: ATG
- reading in frame
- stop codon: TAG, TGA,TAA