Biochem - molecular, genes, lipids Flashcards
excess ATP, dATP, decreased lymphocyte count
ADA (adenosine deaminase deficiency), AR mutation
SCID
ADA (adenosine deaminase deficiency), AR mutation
3 mo boy with delayed motor development, develops dystonia. 2 years later exhibits compulsive nail biting and banging head against wall. Develops renal failure and arthritis.
Lesch-Nyhan Syndrome - mutation in HGPRT
excess uric acid + adenine + guanines
Lesch-Nyhan Syndrome - mutation in HGPRT (converts hypoxanthine to IMP and guanine to GMP
HGPRT stands for:
HGPRT: Hyperuricemia Gout Pissed off (aggression, self-mutilation) Retardation (intellectual disability) DysTonia
trmt for excess uric acid + adenine + guanines?
allopurinol or febuxostat (2nd line)
degenerate codon definition
most a.a. are encoded by multiple codons
unambiguous codon definition
each codon specifies 1 a.a.
commaless codon definition
read from a fixed starting point as a continuous sequence of bases
universal codon definition (exception to this?)
genetic code is conserved throughout evolution
exception in humans: mitochondria
difference btwn DNA pol I and III
Pol III - 5’->3’ synthesis, proofreads with 3’->5’ exonuclease, LEADING + LAGGING strand
Pol I - same fxn as pol III, but can also excise RNA primer with 5’->3’ exonuclease, LAGGING strand only
Rx that inhibits DNA topoisomerase in prokaryotes
fluoroquinolones
leading strand orientation?
lagging strand orientation?
leading: 3’ –> 5’
lagging: 5’ –> 3’
difference between transition and transversion
Transition - change within the same class
Transversion - change to a different class
Nonsense mutation
Nucleotide substitution resulting in early stop codon.
Missense mutation
Nucleotide substitution resulting in changed amino acid (conservative if new amino acid is similar in chemical structure).
disease with defective nucleotide excision repair
xeroderma pigmentosum, AR
disease with defective mismatch repair
HNPCC
disease with defective non-homologous end joining
ataxia telangiectasia
how is DNA and RNA template read and synthesized during transcription/translation?
DNA: 3 –> 5 (synthesized 5’–>3’)
mRNA: 5 –> 3 (synthesized N–C terminus)
mRNA stop codons?
UGA = U Go Away. UAA = U Are Away. UAG = U Are Gone.
where is the TATA box located?
promoter region
3 types of eukaryotic RNA polymerase
I - rRNA (most numerous; “Rampant”)
II - mRNA (largest, “Massive”)
III - tRNA (smallest, “Tiny”)
types of prokaryotic RNA polymerase
1 RNA polymerase, but makes all 3 (rRNA, mRNA, tRNA)