biochem I Flashcards
What are the 4 macro-molecules?
Protein,Carbohydrates, lipids,nucleic acids
Enzymes that make macro-molecules are called
Polymerases
Polymerization often occurs via
dehydration synthesis aka condensation
The opposite of a dehydration reaction is called
Hydrolysis
What is the structure of an amino acid
H2N-CH-COOH with an R group attached to the CH
What is a peptide bond?
Formed when two amino acids go through a dehydration synthesis (CO-NH)
Which way are proteins synthesized
N to C synthesis
Tertiary structure (folding) is due to what interactions within a polypeptide?
Side chain interactions
What are the three non-covalent interactions in tertiary structure?
Non-polar to non-polar
Polar to polar
Acid to base
What causes the covalent interaction in tertiary structures?
Disulfide bridges
How are Quaternary structures similar to tertiary structures
They both are formed due to side chain interactions except quaternary is between different polypeptides while tertiary is within a polypeptide.
What are some functions of a protein?
Enzymes, receptors, channels, porters, transport, cell structure, antibodies, hormones etc…
What is a monomer of carbohydrates called?
monosaccharide
What are the 3 common monosaccharides?
Glucose, Fructose and Galactose
What are the 3 common disaccharides?
Lactose, Maltose and Sucrose
How do you form Maltose?
Glucose + Glucose
How do you form Sucrose?
Glucose + Fructose
How do you for Galactose?
Glucose + Galactose
What is the formula of a disaccharide?
C12H22O11
What are the 3 common polysaccharides?
Glycogen, Starch and Cellulose
What is glycogen?
Animal glucose storage
What is starch?
Plant glucose storage
What is cellulose?
Plant structure
What are the primary functions of carbohydrates?
Cellular energy, cell surface markers and adhesion (prokaryotes)
What is a monomer of a lipid?
Hydrocarbon
What is a fully saturated fatty acid?
All single bonds between the carbons
What state are saturated fatty acids at room temperature?
They are solids
What is an unsaturated fatty acid?
There will be double bonds between the carbons
What state are unsaturated fatty acids at room temperature?
Liquid
What is a triglyceride?
3 fatty acids connected to a glycerol
In what form do humans store energy?
As triglycerides
What is a phospholipid?
2 fatty acids connected to a glycerol with the third fatty acid replaced by a phosphate group
What is the function of phopholipids?
cell membrane (phopholipid bilayer)
What is a terpene
Made up of atleast two isoprene
What is a squalene?
It is a tri-terpene
What is the function of a terpene?
Precursor for cholesterol, steroids and ear wax
What is the function of cholesterol?
Cell membrane, bile salts, steroid precursor and vitamin D precursors.
What are the 4 types of lipids?
Triglycerides, phospholipids, terpenes and cholesterol
Can we consider enthalpy from Gibbs free energy as a potential or kinetic energy?
Potential Energy
Can we consider entropy x Temperature from Gibbs free energy equation as a potential or kinetic energy?
Kinetic energy
G<0 means the reaction is?
Spontaneous
G>0 means the reaction is?
Non-spontaneous
G=0 means the reaction is?
At equilibrium
What is exergonic?
A reaction that gives off energy
What is endergonic?
A reaction that requires energy
What is a coupling reaction?
Coupling an exergonic with an endergonic reaction to allow for a spontaneous reaction to occur
What is an intermediate compound?
It is a high energy, temporary compound and it is also known as a transition state.
What is the energy of activation?
Energy needed to produce the transition state
Is the relationship of activation energy and rate of reaction inversely or directly proportional?
Inverse
Do catalysts/enzymes affect thermodynamics?
No
Do enzymes affect kinetics?
Yes
What are the two ways enzymes increase the rate of reaction?
By stabilizing the transition state and reducing the activation energy
What are the three distinct characteristics of enzymes?
- Must increase rate of reaction
- Must not be used in the reaction
- It is specific
What is another name for an “off” enzyme
Tense
What is another name for an “on” enzyme
Relaxed
What is phosphorylation?
Sticking a phosphate to an enzyme to turn it on or off
What is Km?
[S} required to reach 1/2 Vmax
Decreased Km will be caused by?
Increased affinity
What is competitive inhibition (binds at active site)?
Higher Km and similar Vmax compared to uninhibited
What is non-competitive inhibition (binds at an allosteric site)?
Similar Km and reduced Vmax compared to uninhibited
What is uncompetitive inhibition (binds at allosteric site)?
Decreased Vmax and Km compared to uninhibited
What is mixed inhibition (binds at allosteric site)?
Vmax decreases and Km varies compared to uninhibited