AAMC 2 - Bio/Biochem Flashcards
Do purines have a two-ring structure?
Yes.
Purines (like adenine & guanine) contain a fused two-ring structure.
Do pyrimidines have a two-ring structure?
No.
Pyrimidines (like thymine and cytosine) are made of a single ring structure.
Describe the structure or purines and pyrimidines, respectively.
Purines: Composed of a fused two-ring structure. Examples include Adenine and Guanine.
Pyrimidines: Composed of a single ring structure. Examples include Thymine and Cytosine.
What is the only amino acid containing a sulfhydryl group?
Cysteine is the only amino acid that contains a sulfhydryl group (thiol and sulfonyl are alternative names).
Note: methionine contains a sulfur but it is NOT an -SH group. It is a sulfur bond by two carbons.
A large carbohydrate is tagged with a fluorescent marker and placed in the extracellular environment around a macrophage. The macrophage ingests the carbohydrate via phagocytosis. Which cellular structure is most likely to be fluorescently labeled upon viewing with a light microscope soon after phagocytosis? Explain the process used by the structure you choose.
A. Nucleus
B. Golgi apparatus
C. Lysosome
D. Endoplasmic reticulum
C. Lysosome
The answer to this question is C because:
- when a macrophage ingests foreign material, the material initially becomes trapped in a phagosome.
- The phagosome then fuses with a lysosome to form a phagolysosome.
- Inside the phagolysosome, enzymes digest the foreign object.
Of the cell structures listed, the labeled carbohydrate is most likely to be microscopically visualized within a lysosome (phagolysosome).
Inhibition of phosphofructokinase-1 by ATP is an example of:
I. allosteric regulation.
II. feedback inhibition.
III. competitive inhibition.
A. I only
B. III only
C. I and II only
D. II and III only
C. I and II only
The answer to this question is C because ATP, the end product of glycolysis, downregulates through feedback inhibition the activity of phosphofructokinase-1 by binding to a regulatory site other than the active site of the enzyme (allosteric regulation). In contrast, competitive inhibition involves competition for binding to the active site.
Can an allosteric regulation be classified as competitive inhibition at the same time?
No.
By definition, allosteric regulation is inhibition by binding somewhere other than the active site.
What do you know about a protein or molecule if the isoelectric point is 9?
A molecule with an isoelectric point of 9 will be positively charged at physiological pH
Does folding into tertiary structure occur in the cytoplasm?
No.
Although the hydrophobic effect is greatly associated with protein folding, we know that proteins are folded in the rough endoplasmic reticulum.
Where are secretory proteins synthesized?
In the rough endoplasmic reticulum
β-catenin (a protein that activates transcription factors for certain genes) most likely has:
A. multiple subunits.
B. very few disulfide bonds.
C. a nuclear localization sequence.
D. a high proportion of surface-exposed nonpolar residues.
C. a nuclear localization sequence.
β-catenin activates transcription factors for target genes. As transcription factors are found in the nucleus, β-catenin must enter the nucleus.
Proteins that are translocated into the nucleus usually contain a nuclear localization sequence.
What is ubiquitination?
Ubiquitination targets a protein for degradation by a proteasome.
Under what condition will disulfide bonds be broken?
Disulfide bonds will be broken under reducing conditions (low pH)
Under what conditions will disulfide bonds be formed between cysteine residues?
Cysteine residues will form disulfide bonds under oxidizing conditions (high pH)
The enzyme encoded by the tdh2 gene (glyceraldehyde-3-phosphate dehydrogenase (GAPDH)) catalyzes the reversible conversion of:
A. 3-phosphoglycerate to 1,3-bisphosphoglycerate.
B. glyceraldehyde-3-phosphate to 1,3-bisphosphoglycerate.
C. fructose-1,6-bisphosphate to glyceraldehyde-3-phosphate.
D. 2-phosphoglycerate to 3-phosphoglycerate.
B. glyceraldehyde-3-phosphate to 1,3-bisphosphoglycerate.
This is step 5 of glycolysis.
What is the best experimental method to analyze the effect of tdh2 gene deletion on the rate of histone acetylation? Comparing histone acetylation in wild-type and Δtdh2 cells by:
A. Western blot
B. Southern blot
C. Northern blot
D. RT-PCR
A. Western blot
Posttranslational modification of proteins such as histone acetylation is analyzed by Western blotting.
Posttranslational modification of proteins such as histone acetylation is analyzed by ______ blotting.
Posttranslational modification of proteins such as histone acetylation is analyzed by Western blotting.
Histone acetylation and methylation are examples of what kind of modification?
Posttranslational modification.
These can be analyzed using western blotting.
How can a researcher analyze a sample to see if post-translation modifications have occurred?
Western Blotting
What are the primary myelin-forming cells in the peripheral nervous system?
A. Microglia
B. Astrocytes
C. Schwann cells
D. Oligodendrocytes
C. Schwann cells
Schwann cells produce myelin in the peripheral nervous system
In the central nervous system, oligodendrocytes produce myelin.
_________ support and brace the neurons and anchor them to their nutrient supply lines. They also play an important role in making exchanges between capillaries and neurons.
Astrocytes support and brace the neurons and anchor them to their nutrient supply lines. They also play an important role in making exchanges between capillaries and neurons.
________ cells monitor and maintain the health of neurons by detecting injuries to the neuron.
Microglial cells monitor and maintain the health of neurons by detecting injuries to the neuron.
Osmotic pressure Π is given by the relation:
Π = iMRT
where i is the van’t Hoff factor, M is the concentration of solute, R is the gas constant, and T is the temperature. The osmotic pressure of sea water is approximately 24 atm at 25°C. What is the approximate concentration of salt in sea water (approximated by NaCl with i = 2)? (Note: Use R = 0.08 L•atm/mol•K.)
A. 0.25 M
B. 0.50 M
C. 0.75 M
D. 1.0 M
B. 0.50 M
The answer to this question is B since algebraic manipulation of the relation gives
M = Π/iRT
= 24 atm / (2 × 0.08 L•atm/mol•K × 300 K)
= 24 / (2 × 24) mol/L
= 0.5 M.
A prion is best described as an infectious:
A. prokaryote.
B. transposon.
C. protein.
D. virus.
C. protein
A prion is an abnormally folded protein that induces a normally folded version of the protein to also adopt the abnormal structure, which is often deleterious.
Define:
Prions
Prions are infectious proteins.
They are misfolded proteins that cause other proteins to become misfolded, with implications for cellular function.
Creutzfeldt-Jakob disease (human form of “mad cow disease”), fatal familial insomnia, and kuru (transmitted by cannibalism) are all caused by prions
Define:
Viroids
Viroids are small infectious particles found in plants that can silence gene expression by binding to specific RNA sequences
Assume that S. typhi immediately enters the bloodstream from the small intestine. Of the following, which would be the first major organ that bloodborne S. typhi would encounter?
A. Stomach
B. Pancreas
C. Large intestine
D. Liver
D. Liver
The answer to this question is D because blood from the small intestine is transported first to the liver, which regulates nutrient distribution and removes toxins from the blood.
Which molecule is NOT formed during the citric acid cycle?
A. Malate
B. Succinate
C. α-Ketoglutarate
D. Phosphoenolpyruvate
D. Phosphoenolpyruvate
The answer to this question is D because phosphoenolpyruvate is a product of glycolysis, not the citric acid cycle.
Under anaerobic conditions, how many net molecules of ATP are produced by the consumption of 5 moles of glucose?
A. 3 × 1024
B. 6 × 1024
C. 9 × 1024
D. 1.2 × 1025
B. 6 × 1024
Under anaerobic conditions, 2 moles of ATP are produced from each mole of glucose. Thus, 10 moles of ATP would be generated from 5 moles of glucose.
Since there are 6 × 1023 molecules per mole, 10 moles of ATP is equal to 6 × 1024 molecules.
In humans, eggs and sperm are most similar with respect to:
A. cell size.
B. genome size.
C. the time required for development.
D. the numbers produced by a single individual.
B. genome size.
The answer to this question is B because both eggs and sperm contain a haploid number of chromosomes and therefore they are most similar with respect to their genome size.
In humans, the characteristic tissue of which of the following organs is NOT derived from mesoderm?
A. Brain
B. Heart
C. Kidney
D. Skeletal muscle
A. Brain
Binding to the _______ insinuates we’re affecting synthesis at the transcriptional, or mRNA, level.
Binding to the promoter insinuates we’re affecting synthesis at the transcriptional, or mRNA, level.
Where in the human male reproductive system do the gametes become motile and capable of fertilization?
A. Testis
B. Urethra
C. Epididymis
D. Prostate gland
C. Epididymis
Which of the following associations between a hormone and its category is INCORRECT?
- *A.** Aldosterone—mineralocorticoid
- *B.** Testosterone—cortical sex hormone
- *C.** ADH—mineralocorticoid
- *D**. Cortisone—glucocorticoid
C
Unlike the other hormones listed here, ADH is not secreted by the adrenal cortex and is therefore not a –corticoid. Rather, ADH is a peptide hormone produced by the hypothalamus and released by the posterior pituitary that promotes water reabsorption. The other associations are all correct.
Which of the following hormones directly stimulates a target tissue that is NOT an endocrine organ?
- *A.** ACTH
- *B.** TSH
- *C.** LH
- *D.** GH
D
A hormone that directly stimulates a non-endocrine target tissue is referred to as a direct hormone.
Glancing at the answer choices, we notice that all of the hormones are secreted by the anterior pituitary gland. The direct hormones secreted by the anterior pituitary are prolactin, endorphins, and growth hormone (GH). All of the other answer choices are tropic hormones.
The tropic hormones of the anterior pituitary include follicle-stimulating hormone (FSH), luteinizing hormone (LH), adrenocorticotropic hormone (ACTH), and thyroid-stimulating hormone (TSH).
Which of the following statements concerning growth hormone is NOT true?
- *A.** Overproduction of growth hormone in adults results in acromegaly.
- *B.** It promotes growth of bone and muscle.
- *C.** It is produced by the hypothalamus but secreted by the pituitary.
- *D.** A childhood deficiency in growth hormone results in dwarfism.
C
Growth hormone is a direct hormone secreted by the anterior pituitary. Among its many functions, GH promotes growth of bone and muscle, eliminating (B).
An overproduction of growth hormone in children results in gigantism, whereas in adults it results in acromegaly (enlargement of the small bones in the extremities and of certain facial bones, such as the jaw), eliminating (A).
On the other hand, a childhood deficiency of growth hormone results in dwarfism, eliminating (D).
GH is synthesized and secreted in the anterior pituitary; (C) describes antidiuretic hormone and oxytocin, not GH.