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IB Biology HL > 3 genetics > Flashcards

3 genetics Flashcards

1
Q

gene

A

a heritable factor that consists of a length of DNA and influences a specific characteristic.

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2
Q

allele

A

the various, specific forms of a gene that usually vary from each other by one or a few bases.

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3
Q

gene locus

A

the specific position of a gene on a chromosome.

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4
Q

what is the diploid state

A

having a pari of each kind of chromosome

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5
Q

what is the haploid state

A

having one copy of each chromosome

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6
Q

homozygous if

A

two copies of the same allele

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7
Q

heterozygous if

A

you have two different alleles

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8
Q

chromosomes

A

long DNA molecules, which contain many genes.

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9
Q

how are new alleles created

A

by mutation

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10
Q

causes of mutation

A

random
radiation
environment
mutagens

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11
Q

what is a base substitution mutation

A

a mutation that changes one nitrogenous base in a sequence

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12
Q

what is a genome

A

all the genetic information of an organism.

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13
Q

HUMAN GENOME PROJECT

A

.

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14
Q

what is sickle cell anemia

A

a common genetic disease in areas where malaria is endemic.

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15
Q

what causes sickle cell anaemia

A

one base substitution causes the glutamic acid to be mutated to valine as the sicth amino acid in the beta haemoglobin polypeptide
GAG to GTG in sense DNA
GAG to GUG in the base sequence of mrna

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16
Q

how is hemoglobin formed

A

by 2 copies of the beta subunit combining with two alpha subunits and four heme groups

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17
Q

what happens to hemoglobin in low oxygen levels

A

the glutamic acid interacts well with water, keeping all the hemoglobin molecuels dissolved inside the erythocyte. the valine is hydrophobic, allowing the beta subunits to join together. when the hemoglobin polymerises into long fibres it causes two problems, its ability to carry oygen is significatnyl reduced and the long fibres poke into the cell membrane, giving the red blood cell the characteristic curved sickle cell appearane.

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18
Q

problems cauesd by sickle cell

A

can get stuck and clog blood vessels anywhere in the body, causing intense pain as blood supply fails. if this happens in the brain it could cause a stroke.

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19
Q

what must be done iwth sickle cells

A

broken down and eliminated from bidy which strains the liver and causes a shortage of functioning red blood cell. new red blood cells must be madei n the bone marrow to replace the cells lost, and the extra work can damage bone structure

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20
Q

what is pleiotropy

A

when one gene has multiple effects

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21
Q

when does sickle cell anemia occur

A

when a person is homozygous for Hb S

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22
Q

what if someone has a heterzygous genotype of HbA HbS

A

the hemoglobin contains some beta subunits with valinea nd some with glutamic acid. the cells will ony sickle when ingected with plasmodium falciparum (parasite causing malaria) as the body destroys the sickled blood cells, it destryous malaria with it.

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23
Q

Hb A Hb A

A

homozygous for normal hemoglobin, no sickling, no protection from malaria

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24
Q

Hb A Hb S

A

heterozygous, carriers of the sickle cell trait, protection from malaria

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25
Q

Hb S Hb S

A

homozygous for altered hemoglobin, sickle cell anemia, no protection from malaria

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26
Q

What can be easily exchanged between bacteria

A

Plasmids

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27
Q

What is the singular, circular prokaryotic chromosome referred to as and why

A

Naked because it is not associated with any proteins

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28
Q

What are plasmids

A

Small circular DNA molecules that are easily exchanged between prokaryotes and may contain several genes

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29
Q

What are eukaryote chromosomes

A

Linear DNA molecules associated with histone proteins

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30
Q

What do homologous chromosomes carry the same sequence of

A

Genes but not necessarily the same alleles of these genes

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31
Q

Compare prokaryotes and eukaryotes

A

Prokaryotes have circular DNA and eukaryotes have linear DNA
plasmids see only present in prokaryotes, not eukaryotes.
Prokaryotes have one chromosome only, eukaryotes have two or more different chromosomes.
Prokaryotes are naked with no associated proteins, but eukaryotes are associated with histone proteins

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32
Q

Diploid nuclei have

A

Pairs of homologous chromosomes

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33
Q

Haploid nuclei have

A

One chromosome of each pair of homologous chromosomes

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34
Q

Diploid

A

Full 46

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35
Q

Haploid

A

Half 23

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36
Q

What is a homologoue

A

Each chromosome in a homologous pair

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37
Q

What is a tetrad

A

A structure consisting of two homologoues

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38
Q

What are autosomes

A

Chromosomes that do not determine sex

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39
Q

Chromosome no in Homo sapiens

A

46

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40
Q

what is the best mitotic phase for viewing

A

metaphase. The chromosomes are fully condensed, making them easier to identify. The chromosomes are spread apart by squashing the cell. This allows images to be captured and analysed, usually by computer.

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41
Q

what is viewing chromosomes under light microcopes and then graphing them called

A

karotyping

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42
Q

what is a karogram

A

a photograph or image of the homologous pairs of chromosomes in decreasing length

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43
Q

what does a karyogram show

A

the chromosomes of an organism in homologous pairs of decreasing length

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44
Q

what can karograms do

A

detect sex or find missing or extra chromosomes. not able to detect differences in allele or mutations

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45
Q

what is non-disjunction

A

the failure of a pair of homologous chromosomes or sister chromatids to separate

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46
Q

when is trisomy caused

A

when one gamete has an extra chromosome

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47
Q

what is autoradiography

A

Autoradiography is a technique that uses X-ray film to visualise the two-dimensional distribution of a radioactively labelled substance. The image formed through autoradiography is called an autoradiograph.

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48
Q

what did cairns first produce images from

A

e.coli

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49
Q

how did cairns produce images from e.coli

A

He produced thymidine (the nucleotide containing thymine) labelled with radioactive hydrogen ( 3 H).
Next, he grew E. coli bacteria in a medium containing the radioactive thymidine. When the E. coli cells replicated their DNA, they used the radioactive thymine, creating radioactive DNA.
He then lysed the cells (ruptured their cell walls and membranes) to release the cell contents, including the intact bacterial DNA, onto slides.
Next, he covered the slides with photographic emulsion and stored them in the dark for two months.
During that period, high energy electrons emitted by the radioactive decay of 3 H within the DNA caused the appearance of dark spots on the photographic emulsion.
The pattern of dark spots indicated the presence of labelled DNA (as shown in Figure 1 ).
The length of the E. coli chromosome could then be measured and was worked out to be about 1 mm, nearly 1 000× longer than the typical E. coli cell.

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50
Q

homologous chromosomes carry the same…

A

sequence of genes, but not necessarily the same alleles of those genes

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51
Q

the two dna molecules formed by dna replication prior to cell division are considered to be sister chromatids until…

A

the splitting of the centromere at the start of anaphase

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52
Q

list the order of genome sizes of T2 phage

A

Escherichia coli , Drosophila melanogaster ,
Homo sapiens and
Paris japonica .

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53
Q

what is genome size

A

total length of dna in an organism

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54
Q

diploid nuclei have pairs of…

A

homologous chromosomes

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55
Q

list the diploid chromosome numbers of

A

Homo sapiens , Pan troglodytes , Canis familiaris , Oryza sativa and Parascaris equorum .

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56
Q

what is a genom

A

the whole of the genetic information of an organism

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57
Q

what is a gene locus

A

refers to the specific position of a gene on a chromosome

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58
Q

what is the constant difference between the alleles of a gene

A

their base sequence

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59
Q

describe the changes when a base substitution mutation occurs

A

the altered allele codes for an altered polypeptide which is folded into a different enzyme, doing a different role and giving a different effect to the organism

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60
Q

one copy of the sickle cell allele provides

A

protection from malaria.

2 copies DOES NOT

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61
Q

what do you read on a genome database to find the similarity to humans

A

indent

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62
Q

prokaryotes do not have dna associated with…

A

histones/proteins

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63
Q

a particular gene will be found at the same locus on

A

homologous chromosomes

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64
Q

Paris japonica (woodland plant) has a larger genome than

A

drosophila melanogaster (fruit flies) and homo sapiens (humans)

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65
Q

what is meiosis

A

a form of nuclear division that produces four haploid nuclei from one diploid nucleus.

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66
Q

what occurs prior to meiosis

A

the DNA of the cell is replicated during the S phase of interphase. Thus meiosis begins, as mitosis does, with replicated chromosomes.

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67
Q

what does meiosis involve

A

two cycles of division, meiosis I and II, which are themselves divided into four phases: prophase, metaphase, anaphase and telophase

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68
Q

what does cytokinesis do

A

divide the cytoplasm of the parent cell to create two daughter cells

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69
Q

what does meiosis produce

A

Four haploid nuclei

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70
Q

what is reduction division

A

Cells begin with two copies of each chromosome and end with only one;

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71
Q

prophase I

A

Chromosomes visible due to supercoiling. The replicated chromosomes form closely-linked homologous pairs (called tetrads or bivalents), which have two chromosomes and four total chromatids.

non-sister chromatids may cross over at points called chiasmata and exchange equivalent segments of DNA.

Centrioles, migrate to opposite poles and spindle fibres start to form. The nucleolus and nuclear membrane disintegrate.

72
Q

what are tetrads/bivalents

A

closely linked homologous pairs

73
Q

metaphase I

A

homologous pairs move together along the metaphase plate, the middle. Maternal and paternal homologues show random orientation towards the poles.

The spindle fibres attach to the centromeres of each chromosome and gently pull to align them along the equatorial metaphase plate.

Spindle fibres connect each centromere to one pole only.

74
Q

anaphase I

A

Spindle microtubules shorten, pulling homologous chromosomes apart towards opposite poles. Unlike mitosis, sister chromatids remain connected at the centromere and move to the same pole.

75
Q

telophase I

A

The first meiotic division effectively ends when the chromosomes arrive at the poles. Note that each chromosome still consists of a pair of chromatids.

The chromatids partially uncoil and a nuclear membrane then reforms around each nucleus formed.

Although technically not part of meiosis, cytokinesis usually occurs during telophase I. Cytokinesis results in two daughter cells with haploid nuclei from meiosis.

76
Q

first division of meiosis

A

Diploid (2n) → Haploid (n)

77
Q

second division of meiosis

A

Separation of chromatids in haploid cells (n → n)

78
Q

prophase II

A

Chromosomes condense again. Centrioles, if present, migrate to opposite poles and spindle fibres start to form. The nucleolus and nuclear membrane disintegrate.

79
Q

metaphase II

A

The spindle fibres attach to the centromere and connect each centromere to both poles. They exert a gentle pull to align the sister chromatids at the equator.

80
Q

anaphase II

A

Centromeres divide and chromatids are moved to opposite poles by spindle fibres.

Once sister chromatids are separated, they are called chromosomes.

81
Q

telophase II

A

Chromosomes reach opposite poles and uncoil. This is followed by nuclear envelope formation and cytokinesis.

Meiosis is now complete, resulting in four haploid daughter cells. Note that each of the four cells are genetically distinct.

82
Q

when does crossing over occur

A

prophase I

83
Q

each chromatid is…

A

a long, single strand of double-helical DNA organised by histone proteins.

84
Q

what is the point at which each chromatid crosses over called

A

chiasmata (sing. chiasma)

85
Q

what does crossing over create

A

new combinations of alleles not present in either original chromosome, forming more variation

86
Q

what are the two possible chromosome locations for metaphase I

A

reduction division

random orientation

87
Q

reduction division

A

Daughter cells contain only half of the chromosomes that were present in the parent cell. In this case a parent cell has four chromosomes; the daughter cell has two. The parent cell is diploid. The daughter cells will be haploid, having only one version of each chromosome.

88
Q

random orientation

A

When pairs of homologous chromosomes line up at the equator of the cell, the paternal copy, for example, has an equal chance of facing either pole. The orientation of one pair (e.g. maternal facing north) does not impact the orientation of any other pair. Each gamete gets one copy of each chromosome, but a random assortment of the maternally and paternally inherited versions.

89
Q

why is variation important

A

it gives a species resilience and flexibility in a changing environment.

90
Q

how is genetic variation increased in offspring

A

crossing over in prophase I
random orientation
fusion of gametes from two indiviuals

91
Q

how does fusion of gametes from two indiviuals increase genetic variation

A

The fusion of male and female gametes (sperm and egg) from different parents combines alleles from two different sources in the diploid zygote. The sperm may carry alleles that have never before combined with alleles found in the egg. Since the genetic information is coming from two different sources, this creates a much broader range of possibilities. Further, which sperm and egg are involved in fertilisation is random.

92
Q

what is non disjunction

A

when sister chromatids fail to separate during anaphase II

93
Q

example of a condition derving from non disjunction

A

trisomy 21, or down syndrome

94
Q

what is a trisomy

A

having an extra copy of a single chromosome (2n+1)

95
Q

Amniocentesis:

A

As the fetus develops in the uterus, it is cushioned by amniotic fluid, as seen in Figure 2. Amniocentesis is usually performed between weeks 14 and 20 of pregnancy. A doctor uses ultrasound imagery to guide a syringe needle through the abdomen and uterine wall without piercing the fetus. The needle is then used to withdraw a small amount of amniotic fluid. Fetal cells floating in the fluid are cultured and karyotyped.

96
Q

when is a developing human called an embryo

A

during the first 10 weeks /40

97
Q

when is a developing human called a fetus

A

after week 10/40

98
Q

Chorionic villus sampling (CVS)

A

Early in pregnancy there is not enough amniotic fluid to perform amniocentesis safely; however, during weeks 10–13, CVS can be used. As in amniocentesis, ultrasound imaging is used to guide the medical professional during the sampling and avoid harm to the developing embryo or fetus. Fetal cells are sampled by inserting a suctioning tool (often a catheter or syringe) through the vagina or abdomen to reach the fetal cells in the chorion

99
Q

what is the chorion

A

a membrane that surrounds the fetus and develops into part of the placenta.

100
Q

risks with cvs

A

bleeding, infection of miscarriage

101
Q

risks of amniocentesis

A

infection, fetal trauma from the needle and miscarriage

102
Q

law of segregation

A

To segregate means to divide and separate. The inheritance of each characteristic is controlled by a pair of alleles in an individual. The two alleles are separated during meiosis so that each gamete contains only one allele for each gene. Alleles are passed from one generation to the next as distinct units. (There is an exception for genes found on the sex chromosomes. There is a further exception for mitochondrial DNA, which is inherited only from the mother.)

103
Q

the law of independent assortment

A

The allele inherited for one trait does not affect which allele will be inherited for any other trait. A gamete contains one copy of each gene; which copy it receives during meiosis is the result of random orientation of homologous chromosomes during metaphase I. (There is an exception for genes whose loci are close together on the same chromosome. These are called linked genes.)

104
Q

the law of dominace

A

In an organism with two different alleles, one allele will determine the trait. The allele that determines the trait is dominant; the unexpressed allele is recessive. (There are exceptions for patterns of inheritance other than dominant–recessive, e.g. co-dominance.)

105
Q

how are dominant and recessive allels represented

A

capitals and lowercase letters

106
Q

heterozygous

A

different

107
Q

homozygous

A

same

108
Q

what is a zygote

A

a fertilsied egg

109
Q

P/F1/F2

A

A specific breeding test in which two parents homozygous for different forms of a trait (e.g. purple flowers and white flowers) are mated. Their offspring (F1 generation) are heterozygous for that trait and are mated with each other to produce the F2 generation.

110
Q

P

A

Parental generation, homozygous.

111
Q

F1

A

First filial (offspring) generation – offspring of the parental generation, heterozygous.

112
Q

F2

A

Second filial generation – offspring of a cross of the F1 generation.

113
Q

phenotype

A

An organism’s observable characteristics or traits, including its morphology and biochemical properties.

114
Q

genotype

A

The two alleles present in an organism for a particular gene
Heterozygous: Having two different alleles for a particular gene
Examples: Rr or CRCW
Homozygous: Having two of the same allele for a particular gene
Examples: RR, rr, CRCR, or CWCW

115
Q

gene

A

a piece of DNA containing information about a particular trait

116
Q

allele

A

a particular version of a gene

117
Q

dominant allele

A

An allele that has the same effect on the phenotype whether one or two copies are present. In the heterozygous state, it will mask the presence of the recessive allele.

118
Q

recessive allele

A

An allele that only has an effect on the phenotype when two copies are present (in a homozygous state).

119
Q

co-dominant allele

A

Alleles that jointly affect the phenotype when present together, creating an intermediate or combined phenotype.

120
Q

punnet squares/grids

A

diagrams used to determine the expected ratio of genotypes and phenotypes in the offspring of parents with known genotypes. The simplest use of a Punnett grid is a monohybrid cross, where only one characteristic is investigated. In the example above, the characteristic would be pea colour.

121
Q

phenotype a blood

A

|A|A or |Ai

122
Q

phenotype b blood

A

|B|B or |Bi

123
Q

phenotype AB blood

A

|A|B

124
Q

phenotype o blood

A

ii

125
Q

which blood group contains co dominant alleles

A

|A|B

126
Q

what does the i stand for in blood groups

A

isoagglytinogen

127
Q

why is o the universal doner

A

it does not trigger an immune response as the genotype ii does not produce any antigens to stick to the surface of the molecule

128
Q

autosomal

A

all chromosomes except the sex chromosomes

129
Q

definition of sex linkage

A

the condition in which a particualr gene is located on a sex chromosome

130
Q

give examples of sex linked gentic didsorders

A

haemophilia

colour blindness

131
Q

why can human females be homozygous or heterozygous for sex linked genes, and why males cannot

A

females have 2 X chromosomes

132
Q

what is the chi squared test

A

a form of statistical analysis that determines how likely it is that an observed distribution is due to chance.

133
Q

symbol for null hypothesis

A

H little 0

134
Q

chi squared test definition

A

a statistical test to better understand communities and whether two populations are associated and dependent upon each other or not.

135
Q

what is the null hypothesis

A

the hypothesis that states that there is no association between the two populations being tested in the chi-squared test.

136
Q

what is a chi squared test used for

A

to anyalayse categorial data

137
Q

what is categorical data

A

data is that which is not linear, but can be separated into categories.

138
Q

what is the ecological frequency

A

the number of times a plant species occurs in a given number of quadrats. Frequency is usually expressed as a percentage and is sometimes called a Frequency Index.

139
Q

how to calucate a chi squared value

A

sum of the two ((O-E)^2/E)

140
Q

which value for probability do you use

A

P = 0.05

141
Q

if your value is larger than the critical value

A

it is statistically significant
so you can reject the null hypothesis
accept the alternative and assume it has been caused by something and not chance

142
Q

if your value is lower than the critical value,

A

it is not statistically signficant, so you must accept the null hypothesis and that it was caused by chance and not a cause

143
Q

quadrat

A

a tool used to measure population distribution in a given area. It is often made in a square shape.

144
Q

what is the degree of freedom

A

number of readings (n) -1

145
Q

Which phase of cell division is photographed in order to make a karyogram?

A

metaphase of mitosis

146
Q

Which technique causes fragments of DNA to move in an electric field?

A

gel electrophoresis

147
Q

Which enzyme is used to fuse the cDNA into the plasmid of a bacterium during the process of gene transfer?

A

DNA ligase

148
Q

uses of dna profiling

A

paternity testing

proving the innocence of someone in a crime

149
Q

A student compared diploid chromosome numbers of several species with their genome size. Which of the conclusions about the chromosome number and genome size is true?

A

The size of the genome cannot be deduced from the number of chromosomes.

150
Q

what is chorionic villus sampling

A

sampling cells from the placenta. the chorion is part of the placenta and is fetal in origin

151
Q

during which phase of meiosis does crossing over occur in

A

prophase I

152
Q

function of gel electrophoresis

A

using an electrical current to move molecules through a semisolid medium. the molecules, dna, rna or protein, are seperated by their size and charge

153
Q

gel electrophoresis def

A

Gel electrophoresis is a technique used to separate proteins or fragments of DNA according to size.

154
Q

which end will dna or rna molecules move to in an electric field and why

A

towards the positive electrode because of their negative electric charge

155
Q

why is normal dna not suitable for gel electrophoresis

A

too long (milions of base pairs)

156
Q

how can dna be changed to become appropriate for gel electrophoresis

A

digested with special enzymes called restriction endonucleases

157
Q

what do restriction endonucleuases do

A

digest dna by cutting the backbone of the dna double helix at highly specific sequences, producing shorter dna segments and distinctive fragment patterns. used to produce dna profiles unique to each indiviual

158
Q

how does gel electrophoresis work

A

Samples with fragments of DNA are loaded into small depressions, called wells, on one end of the gel (a jelly-like polymer), as seen in Figure 2. The gel is submerged in a buffer solution, and an electric current is run through the gel. The DNA samples must begin near the negative pole, so that they can spread out as they are drawn toward the positive pole. The consistency of the gel allows separation of the DNA fragments by size. The gel is made of long polymers, often the polysaccharide agarose, that bind together in an interwoven mesh or sieve. The DNA must travel through the spaces between the polymers. Smaller pieces can slip through the spaces more easily, allowing them to travel further along the gel in a given amount of time. By using higher concentrations of polymer, the average size of the pore can be reduced, and smaller pieces of DNA can be separated. Usually, one or more of the wells is filled with a ‘DNA ladder’, which contains DNA fragments with a range of known lengths. By using the DNA ladder, the length of sample fragments can be determined.

159
Q

when can gel electrophoreisis be used

A

whenever the source of dna needs to be identified. e.g. which strain of bacteria or which parent

160
Q

what does pcr do

A

repeatedly copy fragments of dna

161
Q

stages of pcr

A

denaturation
annealing
extension

162
Q

denaturation in pcr

A

temp is increased to 98C to seperate dna strands by breaking hydrogen bonds

163
Q

annealing in pcr

A

temp is decreased to 60C to allow primers to base pair to complementary dna templates

164
Q

extension in pcr

A

heat resistant taq-polymerase replicates dna to build a new dna strand

165
Q

what does the reaction chamber of pcr contain

A

many free nucleoside triphosphates, primers that allow replication to occur from the desired point

166
Q

why is taq polymerase used instead of dna polymerase

A

it does not denature

167
Q

what is dna profiling

A

a technique that examines variable portions of dna to create a profile or fingerprint that is unique to the indiviual.

168
Q

dna profiles come from

A

our parents. they are EXACTLY the same number and length of dna fragments, since a persons dna sequence is the same in all cells.

169
Q

transgenic organims are

A

gentically modified organisms

170
Q

what is the universal genetic code

A

all genetic code is essentially the same between species because lall living things share a common ancestor

171
Q

process of gene transfer in bacteria

A

isolate desired gene using restriction endonucleases

isolate an appropriate plasmid
cut the plasmid with the same restriction endonuclease. this will open the loop of the plasmid. (sticky or blunt ends). add a series of guanine nucleotides to the 5’ end and a series of cytosine endonucleases to the 5’ ends. this complementary sequcnes will allow them to stick together

mix many copies of the target gene and cut plamsid together to allow their complementary unpaired sequences to join together, thus adding the gene into the plasmid

use the enzyme dna ligase to covalently bond the dna backbones of the gene and plasmid together permenantly sealing the gene into the plasmid loop.

transfer the plasmid with the target dna (recombinant plasmid) back into the bacteria

grow colonies to produce a eukaryotic protein

172
Q

benefits of GMO crops

A

Introduction of new positive traits to the crop
Economic advantages
Environmental advantages
Ecosystem damage

173
Q

risks of GMO crops

A

Increasing monoculture
Corporate control over food supply
Human health concerns

174
Q

How does being a carrier of sca give malaria immunity

A

Cells usually only sickle if infected with plasmodium falciparum. Because the body eliminates sickled red blood cells, the malarial infection is eliminated along with them. Having two alleles leads to sca so you must only have one.

175
Q

In sca:

A

Hemoglobin proteins polymérisé into long fibres. There are hundreds of millions of hemoglobin molecules in each RBC.

Rbcs take a sickle shape when stretched out by the hemoglobin fibres inside.

176
Q

Genotypes for sickle cell anemia

A

HbA HbA - homozygous for normal hemoglobin, no sickling, no protection from malaria

HbA HbS - heterozygous, carriers of the sickle cell trait, protection from malaria

HbS HbS homozygous for altered hemoglobin, sca, no protection from malaria

IB Biology HL (15 decks)

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