1st & 2nd Year Genetics Flashcards
define genotype
genetic makeup
define phenotype
genotype + environment
describe the structure of a chromosome
central centromere, 4 chromatids (short arms and long arms), telomere cap
how many chromosomes are the
46 (23 pairs)
what is an acrocentric chromosome
centromere at 1 end of the chromosme
how many acrocentric chromosomes are there in humans
5
what is mitosis
cell division forming 2 diploid cells identical to the parent cells
what is meiosis
cell division to 4 haploid games
what causes variation in meoisis
independent assortment & crossing over
how many base pairs are there in the genome
3,000,000,000 base pairs
how many genes are the in human
30,000 genes
what are the phases of interphase of the cell cycle
G1, G0, S phase, G2
what are the phases of mitosis of the cell cycle
prophase, metaphase, anaphase, telophase, cytokenesis
define nucleoside
base + sugar
define nucleotide
base + sugar + phosphate group
define nucleic acid
linked nucleotides
name the bond between adjacent nucleotides
Phosphodiester bond
where does DNA replication being
origin of replication
what enzyme is responsible for unwinding the DNA strand in DNA replication
helicase
what enzyme synthesises primers
primase
what is the role of DNA polymerase in DNA replication on the leading strand
adds nucleotides to free 3’ end of template strand and
what is the role of DNA polymerase in DNA replication on the lagging strand
replaces nucleotides with primers on lagging strand
what is an oncogene
promote cell division
give 2 examples of oncogenes
RAS, erb-B2
what is a tumour suppressor gene
inhibit cell division for DNA repair
give 3 examples of tumour suppressors
p53, BRCA, Rb
what is the promotor region
DNA region that initiates transcription
what is transcription
DNA -> mRNA
where does transcription occur
nucleus
what enzyme is responsible for transcription
RNA polymerase
how is transcription regulated
steroid hormones
what is splicing
pre mRNA -> mRNA, introns removed & exons remain
where does splicing occur
nucleus
what is an intron
non-coding DNA/RNA segment
what is an exon
coding DNA/RNA segment
what % of the genome do exons make up
2-3% of genome
what is a codon
3 nucleotides corresponding to 1 amino acid
what is translation
mRNA decoded by a ribosome -> polypeptide chain
where does translation occur
cytoplasm
what enzyme is responsible for translation
peptidyl transferase
what is the role of aminoacyl-tRNA synthetase
binds amino acids to their tRNA molecule
what is aminoacyl-tRNA
amino acid bound to tRNA
give examples of post-translational modifications
glycosylation, degradation, disulfide bonds, cleavage, methylation, phosphorylation, folding
where do post-translational modifications occur
free ribosomes in cytosol
where do co-translational modifications occur
bound ribosomes on RER
where are proteins from post-translational modifications for
cytosol, nucleus, mitochondria
where are proteins from co-translational modifications fo
membrane, ER, Golgi, secretion
define mutation
causes a genetic disorder or heritable change
define polymorphism
variation with population frequency >1%, doesn’t cause disease but may predispose
how many polyporphisms have been identified
> 10 million identified
what does SNP stand for
single nucleotide polymorphism
how many SNPs does a person have
3 million/person
what is a point mutation
change in a single base
what is a missense mutation
changes amino acid sequence
what is a nonsense mutation
creates new stop codon
does a missense mutation affect protein function
it could
what is the effect of a nonsense mutation
changes length of protein
what is a silent mutation
doesn’t change amino acid
what is the effect of a silent mutation
no effect on function
what is a frameshift mutation
addition/deletion of a single base
what is a null mutation
no effective mRNA produced
what is a promotor mutation
no/reduced transcription
what is a trinucleotide repeat expansion mutation
codon repeated
what is a copy number variation
group term for unbalanced mutation
what is an inversion mutation
segment of chromosome copied in reverse order
what is a robertsonian translocation
acrocentric chromosomes stuck together
give an example of a robertsonian translocation
Down synd
what is a reciprocal translocation
exchange of material between non-homologous chromosomes
what is a balanced mutation
all chromosomal material present, not in correct arrangement
what is aneuploidy
extra/missing chromosome
what type of aneuploidy is better tolerated and why
X chromosome aneuploidy better tolerated (X inactivation)
what is somatic mosaicism
different genotypes in 1 set of chromosomes
what is a post-zygotic mutation
neither parent is mosaic but the child
what genetic tests are genomewide testing
aCGH, exome enriched NGS, whole genome sequencing
how many megabases are affected by chromosomal translocations
100
how many megabases are affected by deletions
10
how many megabases are affectd by microdeletions
5
what mutations can be identified by standard karyotyping
aneuploidy, chromosomal translocations, deletions
what mutations can be identified by aCGH
unbalanced chromosomal mutations; aneuploidy, chromosomal translocation, deletions, microdeletions
how does FISH work
highlights specific chromosomes/genes
what mutations are identified by FISH
small translocations, microdeletions & deletions
what is the function of PCR
amplifies small genetic changes allowing it to be sequenced
what is the process of PCR
Heated to 95, denatures DNA
Cooled to 55, primers anneal
Heated to 72, heat resistant Taq polymerase adds nucleotides, making 2 new identical stands
what occurs after DNA is amplified in PCR to show where a mutation is
sanger sequencing
are mendelian disorders high or low penetrance
high
what are the types of mendelian disorders
autosomal dominant, autosomal recessive, x-linked, mitochondrial
what is the risk of a child getting an autosomal dominant condition if 1 parent has it
50 percent
what is the risk of a child getting an autosomal recessive condition if 1 parent has it
25%
what are consanquineous families
incest
how will the offspring of a man with a x-linked condition be affected
all males affected, females carriers
what is heteroplasmy
proportion of mitochondria with mutation
inheritance pattern of mitochondrial diseases
maternally
what is x-inactivation
gene-dosage compensation, 1 active X chromosome
what is a mechanism of x-inactivation
methylation
are non-medialian disorders high penetrance
no
what is y linked inheritance
non-mendelian, male, infertile
what is a de-novo mutation
kid has it though parents don’t
what is imprinting
variation in gene expressed depending on parents its inherited from
give an example of imprinting and the affected gene
angleman syndome and chromosome 15 UBE3A gene
what is FGFR3 achondroplasia
dwarfism
what is trisomy 18
Edward synd
what is trisomy 21
Down synd
what is 45X
Turner’s synd
what is the presentation of turner’s synd
short, low hairline, heart problem, OP, hypothyroid, lymphedema, primary amenorrhea, brachdactyly, infertile, +- breast development
what is 47XXY
Klinefelter’s synd
what is the presentation of klinefelter’s
low testicular volume, undescended testes, infertile, gynaecomastia, intellect dysfunction, no sperm in semen
what is the Philadelphia chromosome
leukaemia, translocation
what is BRCA1
familial breast/ovarian cancer
what is Von-Hippel Lindau disease
inherited tumour disorder
define penetrance
likelihood of having disease if you have the mutation
what is the presentation of angelman synd
what is 4p16.3 microdeletion
Wolf-Hirschhorn synd
what is Kabuki synd
de novo MLL2
what test detects Wolf-Hirschhorn synd
array CGH
what test detects Kabuki synd
NGS
what is a driver mutation
mutations that drive carcinogenesis
what are pasenger mutations in cancer
incidental mutations since tumour is unstable
what is the 2 hit hypothesis
> 2 copies of the functioning gene mutated for cancer to develop
what is a high risk patient for breast cancer
BRAC1 mutation
what is a medium risk patient for breast cancer
mother and sister with breast cancer age 45
what is a low risk patient for breast cancer
mother with breast cancer age 70