1.2ci - Protein Structure, Ligand Binding and Conformational Change Flashcards

1
Q

Proteins are polymers of…

A

amino acid monomers

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2
Q

Amino acids are linked by peptide bonds to form…

A

polypeptides

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3
Q

The chemical structure of a peptide bond involves…

A

two amino acids (OH and H) joining together to form water

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4
Q

Amino acids have the same basic structure, differing only in…

A

the R group present

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5
Q

The R groups of amino acids vary in…

A

size, shape, charge, hydrogen bonding capacity and chemical reactivity

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6
Q

Amino acids are classified according to their R groups:

A

basic (positively charged), acidic (negatively charged), polar, hydrophobic

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7
Q

Basic amino acids have which R group?

A

NH2

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8
Q

Acidic amino acids have which R group?

A

COOH

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9
Q

Polar amino acids have which R group?

A

OH

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10
Q

Hydrophilic amino acids have which R group?

A

Hydrocarbon

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11
Q

The wide variety of functions carried out by proteins results from…

A

the diversity of R grouups

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12
Q

The primary structure is…

A

the sequence in which amino acids are synthesised into the polypeptide

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13
Q

Hydrogen bonding along the backbone of the protein strand results in…

A

regions of secondary structure

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14
Q

Regions of secondary structure include…

A

alpha helices, parallel or anti-parallel beta-pleated sheets, or turns

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15
Q

The polypeptide folds into…

A

a tertiary structure

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16
Q

The structure conformation is stabilised by…

A

interactions between R groups

17
Q

Regions of tertiary structure include…

A

hydrophobic interactions, ionic bonds, London dispersion forces, hydrogen bonds, disulphide bridges

18
Q

Disulphide bridges are…

A

covalent bonds between R groups containing sulphur

19
Q

Quaternary structure exists in…

A

proteins with 2 or more connected polypeptide subunits

20
Q

Quaternary structure describes…

A

the spatial arrangements of the subunits

21
Q

A prosthetic group is…

A

a non-protein unit tightly bound to a protein and necessary for its function

22
Q

The ability of haemoglobin to bind to oxygen is dependent upon the…

A

non-protein haem group

23
Q

Interactions of the R groups can be influenced by…

A

temperature and pH

24
Q

Increasing temperature disrupts the interactions that…

A

hold the protein in shape causing it to unfold and eventually become denatured

25
Q

The charges on acidic and basic R groups are affected by…

A

pH

26
Q

As pH increases or decreases from the optimum, the normal ionic interactions between charged groups are…

A

lost, which gradually changed the conformation of the protein until it is denatured